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BaseInfo

ncRNA ID novel_gar_miR1910
Species Gossypium arboreum
Class miRNA
Genome position Chr8:59391858-59391952 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029586
Length 24
Mature sequence(if miRNA) 72 - CAAAAUAUGUAGAUAUUGAAGGCU - 95
Stem-loop(if miRNA) --    A  A       C        ------AA           UUUAU
  UCUU AA GUUUAUA AUUUUGUC        UUUAAUUCUAA     U
  |||| || ||||||| ||||||||        |||||||||||     G
  GGAA UU UAGAUGU UAAAACAG        GAAUUAAGAUU     A
UC    G  A       A        GAAAACCG           UUUUA
Stem-loop sequence UCUUAAAAGUUUAUACAUUUUGUCAAUUUAAUUCUAAUUUAUUGAAUUUUUUAGAAUUAAGGCCAAAAGGACAAAAUAUGUAGAUAUUGAAGGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017792607.1
ncRNA:24   UCGG--AAGUUAUAGAUGUAUAAAAC   1
  **||--||||=||||||||||||*||
targets:900   CUCCGAUUCAGUAUCUACAUAUUCUG   925

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108488325 (LOC108488325), mRNA uncharacterized LOC108488325(LOC108488325) coding protein psRNATarget