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BaseInfo

ncRNA ID ath-miRf11131-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 20
Mature sequence(if miRNA) NA - UGGGUGUCGAUCGACACCAU - NA
Stem-loop(if miRNA)        AA   -G      A        -     --GA  A
CGACACC  CUG  GUGUCG UCGACACC AUCAU    GC G
|||||||  |||  |||||| |||||||| |||||    || C
GCUGUGG  GAC  UACAGC AGCUGUGG UAGUG    CG G
       -A   AA      A        C     AAGG  C
Stem-loop sequence CGACACCAACUGGGUGUCGAUCGACACCAUCAUGAGCAGCGCGCGGAAGUGAUCGGUGUCGAACGACAUAACAGAGGUGUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JA894865.1
ncRNA:20   UACCACAGCUAGCUGUGGGU   1
  *|||||||||||||||||*=
targets:82   UUGGUGUCGAUCGACACCAG   101

2.5 Sequence 182 from Patent WO2011067745 NA coding protein psRNATarget
DQ069810.1
ncRNA:20   UACCACAGCUAGCUGUGGGU   1
  *|||||||||||||||||**
targets:209   UUGGUGUCGAUCGACACCAU   228

2.5 Arabidopsis thaliana At2g13270 mRNA, partial sequence NA coding protein psRNATarget
AY219108.1
ncRNA:20   UACCACAGCUAGCUGUGGGU   1
  *|||||||||||||||||*=
targets:399   CUGGUGUCGAUCGACACCAG   418

2.5 Arabidopsis thaliana hypothetical protein (At2g06095/F5K7.25) mRNA, complete cds NA coding protein psRNATarget
NM_147252.2
ncRNA:20   UACCACAGCUAGCUGUGGGU   1
  *|||||||||||||||||*=
targets:437   CUGGUGUCGAUCGACACCAG   456

2.5 Arabidopsis thaliana transmembrane protein mRNA transmembrane protein(AT2G06095) coding protein psRNATarget