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BaseInfo

ncRNA ID	novel_gar_miR1893
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr8:94925197-94925386 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029586
Length	24
Mature sequence(if miRNA)	1 - AAAGACUAAUUUACUCUUUGAUCU - 24
Stem-loop(if miRNA)	--         C    C  AC             A   C           C              GUAG   -   GAAUAA     ---U   U      G   AUCAAAGAG AAAU AG  UUUUUUAUUAAAA UUU AUCUAUUUUUA UGUUAAAAACUAGU    CUA AUG      UCAGA    AGU ACACGU A   ||||||||| |||| ||  ||||||||||||| ||| ||||||||||| ||||||||||||||    ||| |||      |||||    ||| ||||||   UAGUUUCUC UUUA UC  GAAAAAUGAUUUU AAA UAGGUAAAAAU ACAAUUUUUGAUCA    GAU UGC      AGUCU    UCA UGUGUA C UC         A    A  -A             A   A           A              --AG   A   ------     UACU   -      C
Stem-loop sequence	AUCAAAGAGCAAAUCAGACUUUUUUAUUAAAAAUUUCAUCUAUUUUUACUGUUAAAAACUAGUGUAGCUAAUGGAAUAAUCAGAUAGUUACACGUGACCAUGUGUACUUCAUUCUGACGUAUAGGAACUAGUUUUUAACAAUAAAAAUGGAUAAAAAUUUUAGUAAAAAGACUAAUUUACUCUUUGAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017761420.1	ncRNA:24   UCUAGUUUCUCAUUUAAUCAGAAA   1   |||*|||||||||||||||||||| targets:1451   AGAACAAAGAGUAAAUUAGUCUUU   1474 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum alpha-L-fucosidase 3-like (LOC108461552), mRNA	alpha-L-fucosidase 3-like(LOC108461552)	coding protein	psRNATarget
XM_017776642.1	ncRNA:24   UCUAGUUUCUCAUUUAAUCAGAAA   1   **|*||||**|||||||||||||| targets:1930   UCAACAAACUGUAAAUUAGUCUUU   1953 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum uncharacterized protein At1g04910-like (LOC108474647), mRNA	uncharacterized protein At1g04910-like(LOC108474647)	coding protein	psRNATarget
XM_017785540.1	ncRNA:24   UCUAGUUUCUCAUUUAAUCAGAAA   1   |*||=|||*||||||*|||||||| targets:942   AUAUUAAAAAGUAAAGUAGUCUUU   965 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108482412 (LOC108482412), mRNA	uncharacterized LOC108482412(LOC108482412)	coding protein	psRNATarget
XM_017786166.1	ncRNA:24   UCUAGUUUCUCAUUUAAUCAGAAA   1   |*||=|||||*|||||||*||||| targets:3673   AAAUUAAAGAAUAAAUUAAUCUUU   3696 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum phytosulfokine receptor 1-like (LOC108483004), transcript variant X2, mRNA	phytosulfokine receptor 1-like(LOC108483004)	coding protein	psRNATarget
XM_017786165.1	ncRNA:24   UCUAGUUUCUCAUUUAAUCAGAAA   1   |*||=|||||*|||||||*||||| targets:4192   AAAUUAAAGAAUAAAUUAAUCUUU   4215 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum phytosulfokine receptor 1-like (LOC108483004), transcript variant X1, mRNA	phytosulfokine receptor 1-like(LOC108483004)	coding protein	psRNATarget
XM_017752094.1	ncRNA:24   UCUAGUUUCUCAUUUAAUCAG-AAA   1   |||||||||||||||||||||-||| targets:1118   AGAUCAAAGAGUAAAUUAGUCCUUU   1142 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum universal stress protein PHOS32-like (LOC108453792), transcript variant X3, mRNA	universal stress protein PHOS32-like(LOC108453792)	coding protein	psRNATarget