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BaseInfo

ncRNA ID novel_gar_miR1882
Species Gossypium arboreum
Class miRNA
Genome position Chr7:77557521-77557574 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029586
Length 24
Mature sequence(if miRNA) 1 - AUAGACUGUGUGACAGACUGUGUG - 24
Stem-loop(if miRNA) --    A         -A   UGUG  UG
  AUAG CUGUGUGAC  GAC    UG  U
  |||| |||||||||  |||    ||
  UGUC GAUACACUG  UUG    GC  A
UG    -         GG   --UA  UU
Stem-loop sequence AUAGACUGUGUGACAGACUGUGUGUGUAUUCGAUGUUGGGUCACAUAGCUGUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017774748.1
ncRNA:24   GUGUGUCAGACAGUGUGUCAGAUA   1
  **|||**||||||||||||||||*
targets:156   AUCACUUUCUGUCACACAGUCUAG   179

3.0 PREDICTED: Gossypium arboreum uncharacterized LOC108473214 (LOC108473214), transcript variant X2, mRNA uncharacterized LOC108473214(LOC108473214) coding protein psRNATarget
XM_017774747.1
ncRNA:24   GUGUGUCAGACAGUGUGUCAGAUA   1
  **|||**||||||||||||||||*
targets:156   AUCACUUUCUGUCACACAGUCUAG   179

3.0 PREDICTED: Gossypium arboreum uncharacterized LOC108473214 (LOC108473214), transcript variant X1, mRNA uncharacterized LOC108473214(LOC108473214) coding protein psRNATarget