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BaseInfo

ncRNA ID	novel_gar_miR1848
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr6:56556118-56556351 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029586
Length	24
Mature sequence(if miRNA)	1 - AGAAUUGUAUGAAACAGUGACGCC - 24
Stem-loop(if miRNA)	--  A          AC                C      C                                               G              AAAAAUCAAAUCCA   AG AUUGUAUGAA  AGUGACGCCACGUCAU UGUAUC CUUUCCAAUAGUUUUAUGCCACAUCAGUAUUCUUAUCCUGAAUUUCA GAUUUUAUCUUGAA              A   || ||||||||||  |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   UC UAACAUAUUU  UCAUUGCGGUGCAGUA ACAUAG GAAAGGUUAUCAAAAUACGGUGUAGUCAUAAGAAUAGGAUUUAAAGU CUAAAAUAGGACUU              A UU  C          CA                A      A                                               A              AAAAUCAUAAAAUU
Stem-loop sequence	AGAAUUGUAUGAAACAGUGACGCCACGUCAUCUGUAUCCCUUUCCAAUAGUUUUAUGCCACAUCAGUAUUCUUAUCCUGAAUUUCAGGAUUUUAUCUUGAAAAAAAUCAAAUCCAAAUUAAAAUACUAAAAUUCAGGAUAAAAUCAUGAAAUUUAGGAUAAGAAUACUGAUGUGGCAUAAAACUAUUGGAAAGAGAUACAAAUGACGUGGCGUUACUACUUUAUACAAUCCUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017758885.1	ncRNA:24   CCGCAGUGACAAAGUAUGUUAAGA   1   |||||||||||||||||||||*|| targets:1532   GGCGUCACUGUUUCAUACAAUCCU   1555 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum enolase-like (LOC108459500), mRNA	enolase-like(LOC108459500)	coding protein	psRNATarget
XM_017758885.1	ncRNA:24   CCGCAGUGACAAAGUAUGUUAAGA   1   ||=||||||||||||||||||*|| targets:1801   GGUGUCACUGUUUCAUACAAUCCU   1824 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum enolase-like (LOC108459500), mRNA	enolase-like(LOC108459500)	coding protein	psRNATarget
XM_017757744.1	ncRNA:24   CCGCAGUGACAAAGUAUGUUAAGA   1   **=||*||||||||*||||||||| targets:374   UCUGUAACUGUUUCCUACAAUUCU   397 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum ubiquitin-like protein ATG12 (LOC108458377), transcript variant X3, mRNA	ubiquitin-like protein ATG12(LOC108458377)	coding protein	psRNATarget
XM_017757742.1	ncRNA:24   CCGCAGUGACAAAGUAUGUUAAGA   1   **=||*||||||||*||||||||| targets:399   UCUGUAACUGUUUCCUACAAUUCU   422 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum ubiquitin-like protein ATG12 (LOC108458377), transcript variant X1, mRNA	ubiquitin-like protein ATG12(LOC108458377)	coding protein	psRNATarget
XM_017764021.1	ncRNA:24   CCGCAGUGACAAAGUAUGUUAAGA   1   **=**|||*||||||||=|||||| targets:1547   AAUCACACAGUUUCAUAUAAUUCU   1570 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum bifunctional L-3-cyanoalanine synthase/cysteine synthase D1-like (LOC108463981), transcript variant X1, mRNA	bifunctional L-3-cyanoalanine synthase/cysteine synthase D1-like(LOC108463981)	coding protein	psRNATarget