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BaseInfo

ncRNA ID	novel_gar_miR1836
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr6:21524138-21524353 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029586
Length	24
Mature sequence(if miRNA)	1 - AUUUGGAAUUUAAUCCCUCUACUU - 24
Stem-loop(if miRNA)	--            A       A     UG         AUGCAA   UG   A   A   CA           A            UGG   ---        GAAAU   AUUUGGAAUUUA UCCCUCU CUUUU  GAUUUUAAA      GUU  AUU UUA CAU  UUAAAAUUCUU UGUUAAAUUCAU   UAU   GAUGUUUU     A   |||||||||||| ||||||| |||||  |||||||||      |||  ||| ||| |||  ||||||||||| ||||||||||||   |||   ||||||||     A   UAAACCUUAAAU AGGGAGA GAAAA  CUAGAGUUU      CAA  UAA AAU GUG  AAUUUUAAGAA ACAAUUUAAGUA   GUA   UUACAGAA     A UG            C       A     GU         AAAACA   GU   C   G   AC           A            CAA   ACA        AAAUA
Stem-loop sequence	AUUUGGAAUUUAAUCCCUCUACUUUUUGGAUUUUAAAAUGCAAGUUUGAUUAUUAACAUCAUUAAAAUUCUUAUGUUAAAUUCAUUGGUAUGAUGUUUUGAAAUAAAAUAAAAAGACAUUACAAUGAACAUGAAUUUAACAAAAGAAUUUUAACAGUGGUAACAAUUGAACACAAAAUUUGAGAUCUGAAAAGAAGAGGGACUAAAUUCCAAAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017754697.1	ncRNA:24   UUCAUCUCCCUAAUUUAAGGUUUA   1   ||*||*|||||*|||||||||||| targets:1709   AAAUAUAGGGACUAAAUUCCAAAU   1732 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X2, mRNA	uncharacterized protein DDB_G0271670(LOC108456101)	coding protein	psRNATarget
XM_017754696.1	ncRNA:24   UUCAUCUCCCUAAUUUAAGGUUUA   1   ||*||*|||||*|||||||||||| targets:1709   AAAUAUAGGGACUAAAUUCCAAAU   1732 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X1, mRNA	uncharacterized protein DDB_G0271670(LOC108456101)	coding protein	psRNATarget
XM_017759938.1	ncRNA:24   UUCAUCUCCCUAAUUUAAGGUUUA   1   |**|=|||||*|||||||*||||| targets:1120   AUUUGGAGGGUUUAAAUUACAAAU   1143 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum transcription termination factor MTEF1, chloroplastic (LOC108460446), mRNA	transcription termination factor MTEF1, chloroplastic(LOC108460446)	coding protein	psRNATarget