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BaseInfo

ncRNA ID novel_gar_miR1826
Species Gossypium arboreum
Class miRNA
Genome position Chr10:92100750-92100822 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR959750
Length 20
Mature sequence(if miRNA) 1 - AUGGAGGAGUUGGAAAGAUU - 20
Stem-loop(if miRNA) ---AU                    GA   UUCUCUG
     GGAGGAGUUGGAAAGAUUUU  AUU       U
     ||||||||||||||||||||  |||
     CCUCCUUAACCUUUCUAAAA  UAA       A
CUUAC                    AG   UAAUUUU
Stem-loop sequence AUGGAGGAGUUGGAAAGAUUUUGAAUUUUCUCUGUAUUUUAAUAAUGAAAAAUCUUUCCAAUUCCUCCCAUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017749243.1
ncRNA:20   UUAGAAAGGUUGAGGAGGUA   1
  ||||||||||||||||||||
targets:2517   AAUCUUUCCAACUCCUCCAU   2536

0.0 PREDICTED: Gossypium arboreum zinc finger CCCH domain-containing protein 15-like (LOC108451570), mRNA zinc finger CCCH domain-containing protein 15-like(LOC108451570) coding protein psRNATarget
XM_017777988.1
ncRNA:20   UUAGAAAGGUUGAGGAGGUA   1
  |||*|||||||*||||||||
targets:179   AAUAUUUCCAAAUCCUCCAU   198

2.5 PREDICTED: Gossypium arboreum pentatricopeptide repeat-containing protein At1g03540 (LOC108475970), mRNA pentatricopeptide repeat-containing protein At1g03540(LOC108475970) coding protein psRNATarget