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BaseInfo

ncRNA ID novel_gar_miR1823
Species Gossypium arboreum
Class miRNA
Genome position Chr12:4559201-4559284 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR959748
Length 24
Mature sequence(if miRNA) 1 - UUGCUGUGAUGAUUAUAUUAGAAU - 24
Stem-loop(if miRNA) --     -   A     AUA     A     GAAAAUUUAAUGA
  UUGCU GUG UGAUU   UUAGA UUUAU             A
  ||||| ||| |||||   ||||| |||||
  AACGA UAC AUUGG   AGUCU AGCUG             A
AC     G   -     -CG     -     UACCAACAGUUAC
Stem-loop sequence UUGCUGUGAUGAUUAUAUUAGAAUUUAUGAAAAUUUAAUGAAACAUUGACAACCAUGUCGAUCUGAGCGGUUACAUGAGCAACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017759139.1
ncRNA:24   UAAGAUUAUAUUAGUAGUGUCGUU   1
  *|||**||||||||||||=|||||
targets:105   UUUCACAUAUAAUCAUCAUAGCAA   128

2.5 PREDICTED: Gossypium arboreum glycine-rich cell wall structural protein 2-like (LOC108459735), mRNA glycine-rich cell wall structural protein 2-like(LOC108459735) coding protein psRNATarget