Search result

BaseInfo

ncRNA ID	novel_gar_miR1822
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr10:92100751-92100821 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR959748
Length	20
Mature sequence(if miRNA)	52 - UCUUUCCAAUUCCUCCCAUU - 71
Stem-loop(if miRNA)	---U                    GA   UUCUCUG     GGAGGAGUUGGAAAGAUUUU  AUU       U     ||||||||||||||||||||  |||     CCUCCUUAACCUUUCUAAAA  UAA       A UUAC                    AG   UAAUUUU
Stem-loop sequence	UGGAGGAGUUGGAAAGAUUUUGAAUUUUCUCUGUAUUUUAAUAAUGAAAAAUCUUUCCAAUUCCUCCCAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017749243.1	ncRNA:20   UUACCCUCCUUAACCUUUCU   1   |||||||||||||||||||| targets:2465   AAUGGGAGGAAUUGGAAAGA   2484 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum zinc finger CCCH domain-containing protein 15-like (LOC108451570), mRNA	zinc finger CCCH domain-containing protein 15-like(LOC108451570)	coding protein	psRNATarget
XM_017747561.1	ncRNA:20   UUACCCUCCUUAACCUUUCU   1   *||||||||||*|||||||= targets:2235   CAUGGGAGGAAAUGGAAAGG   2254 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum polyadenylate-binding protein-interacting protein 7-like (LOC108450097), mRNA	polyadenylate-binding protein-interacting protein 7-like(LOC108450097)	coding protein	psRNATarget
XM_017768182.1	ncRNA:20   UUACCCUCCUUAACCUUUCU   1   *||||||||||*|||||||* targets:303   UAUGGGAGGAAAUGGAAAGC   322 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum U-box domain-containing protein 38 (LOC108467536), mRNA	U-box domain-containing protein 38(LOC108467536)	coding protein	psRNATarget
XM_017775881.1	ncRNA:20   UUACCCUCCUUAACCUUUCU   1   =|*||||||||||||||*|| targets:1315   GAGGGGAGGAAUUGGAAUGA   1334 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g61590 (LOC108474017), transcript variant X2, mRNA	F-box/kelch-repeat protein At3g61590(LOC108474017)	coding protein	psRNATarget
XM_017775882.1	ncRNA:20   UUACCCUCCUUAACCUUUCU   1   =|*||||||||||||||*|| targets:1571   GAGGGGAGGAAUUGGAAUGA   1590 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g61590 (LOC108474017), transcript variant X3, mRNA	F-box/kelch-repeat protein At3g61590(LOC108474017)	coding protein	psRNATarget
XM_017775880.1	ncRNA:20   UUACCCUCCUUAACCUUUCU   1   =|*||||||||||||||*|| targets:1643   GAGGGGAGGAAUUGGAAUGA   1662 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g61590 (LOC108474017), transcript variant X1, mRNA	F-box/kelch-repeat protein At3g61590(LOC108474017)	coding protein	psRNATarget
XM_017766155.1	ncRNA:20   UUACCCUCCUUAACCUUUCU   1   =|||||*||||||||*|||| targets:621   GAUGGGUGGAAUUGGUAAGA   640 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum putative disease resistance RPP13-like protein 1 (LOC108465773), mRNA	putative disease resistance RPP13-like protein 1(LOC108465773)	coding protein	psRNATarget
XM_017783016.1	ncRNA:20   UUACCCUCCUUAACCUUUCU   1   *||||*|||||*|||||||| targets:1029   UAUGGAAGGAACUGGAAAGA   1048 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum tetratricopeptide repeat protein 38-like (LOC108480135), transcript variant X2, mRNA	tetratricopeptide repeat protein 38-like(LOC108480135)	coding protein	psRNATarget
XM_017763078.1	ncRNA:20   UUACCCUCCUUAACCUUUCU   1   *||||*|*|||||||||||| targets:856   CAUGGCAAGAAUUGGAAAGA   875 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein ESKIMO 1-like (LOC108463130), mRNA	protein ESKIMO 1-like(LOC108463130)	coding protein	psRNATarget
XM_017783014.1	ncRNA:20   UUACCCUCCUUAACCUUUCU   1   *||||*|||||*|||||||| targets:1029   UAUGGAAGGAACUGGAAAGA   1048 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum tetratricopeptide repeat protein 38-like (LOC108480135), transcript variant X1, mRNA	tetratricopeptide repeat protein 38-like(LOC108480135)	coding protein	psRNATarget
XM_017749145.1	ncRNA:20   UUACCCUCCUUAACCUUUCU   1   *||*|||||||||||*|||| targets:624   CAUUGGAGGAAUUGGUAAGA   643 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum putative disease resistance RPP13-like protein 1 (LOC108451456), mRNA	putative disease resistance RPP13-like protein 1(LOC108451456)	coding protein	psRNATarget
XM_017748410.1	ncRNA:20   UUACCCUCCUUAACCUUUCU   1   *|||||*|||*||||||||| targets:887   UAUGGGUGGACUUGGAAAGA   906 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum putative disease resistance protein RGA1 (LOC108450682), mRNA	putative disease resistance protein RGA1(LOC108450682)	coding protein	psRNATarget