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BaseInfo

ncRNA ID novel_gar_miR1816
Species Gossypium arboreum
Class miRNA
Genome position Chr6:120044619-120044827 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029586
Length 24
Mature sequence(if miRNA) 186 - UGUGCCCCAAGGUGAUGUACUCGG - 209
Stem-loop(if miRNA) --              A              U           A                                ACA  CA  U    A      CAAU  AAA
  GAGUACAUCACCUU GGGCGCACCUGUCU AUUUGUGAAAA GAAAGAUGGUUCGUUGCGAUUGUGUAUUGAUU   GG  GU GAAC AGGUAA    UA   A
  |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||   ||  || |||| ||||||    ||
  CUCAUGUAGUGGAA CCCGUGUGGACAGA UAAACACUUUU CUUUCUACCAAGCAACGCUAACACAUAACUAA   CU  CA CUUG UCCAUU    AU   U
GG              C              C           -                                -CG  AA  -    C      ACCU  AAA
Stem-loop sequence GAGUACAUCACCUUAGGGCGCACCUGUCUUAUUUGUGAAAAAGAAAGAUGGUUCGUUGCGAUUGUGUAUUGAUUACAGGCAGUUGAACAAGGUAACAAUUAAAAAUAAAUAUCCAUUACCUCGUUCACAAUCGCAAUCAAUACACAAUCGCAACGAACCAUCUUUCUUUUCACAAAUCAGACAGGUGUGCCCCAAGGUGAUGUACUCGG