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BaseInfo

ncRNA ID	novel_gar_miR1803
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr7:27769113-27769280 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180721
Length	21
Mature sequence(if miRNA)	148 - CAAAGAGAACAAUACUGGUAU - 168
Stem-loop(if miRNA)	--    A                CAUC     AC        G      CACUU    - UC   CCUC     G  -AGAG  UCC   AUCG UAUUGUUCUCUUUGGG    CAUUG  CUCUCAAG UUUUGU     GAAG G  UCA    CCCAA GA     AC   U   |||| ||||||||||||||||    |||||  |||||||| ||||||     |||| |  |||    ||||| ||     ||   UGGU AUAACAAGAGAAACCC    GUAAC  GGGAGUUC AAAACA     CUUC C  AGU    GGGUU UU     UG   A UA    C                ACAA     CA        -      -AUUU    A GA   --UU     A  GAAAA  UAU
Stem-loop sequence	AUCGAUAUUGUUCUCUUUGGGCAUCCAUUGACCUCUCAAGGUUUUGUCACUUGAAGGUCUCACCUCCCCAAGGAAGAGACUCCUAUAUGUAAAAGUUAUUGGGUUUGAAGCACUUCUUUAACAAAACUUGAGGGACCAAUGAACACCCAAAGAGAACAAUACUGGUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017781980.1	ncRNA:21   UAUGG-UCAUAACAAGAGAAAC   1   |*|=|-|||||||||||||||| targets:2299   AAAUCGAGUAUUGUUCUCUUUG   2320 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum probable inactive receptor kinase At4g23740 (LOC108479406), transcript variant X2, mRNA	probable inactive receptor kinase At4g23740(LOC108479406)	coding protein	psRNATarget
XM_017781979.1	ncRNA:21   UAUGG-UCAUAACAAGAGAAAC   1   |*|=|-|||||||||||||||| targets:2302   AAAUCGAGUAUUGUUCUCUUUG   2323 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum probable inactive receptor kinase At4g23740 (LOC108479406), transcript variant X1, mRNA	probable inactive receptor kinase At4g23740(LOC108479406)	coding protein	psRNATarget
XM_017781982.1	ncRNA:21   UAUGG-UCAUAACAAGAGAAAC   1   |*|=|-|||||||||||||||| targets:2338   AAAUCGAGUAUUGUUCUCUUUG   2359 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum probable inactive receptor kinase At4g23740 (LOC108479406), transcript variant X4, mRNA	probable inactive receptor kinase At4g23740(LOC108479406)	coding protein	psRNATarget
XM_017781981.1	ncRNA:21   UAUGG-UCAUAACAAGAGAAAC   1   |*|=|-|||||||||||||||| targets:2407   AAAUCGAGUAUUGUUCUCUUUG   2428 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum probable inactive receptor kinase At4g23740 (LOC108479406), transcript variant X3, mRNA	probable inactive receptor kinase At4g23740(LOC108479406)	coding protein	psRNATarget