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BaseInfo

ncRNA ID novel_gar_miR1797
Species Gossypium arboreum
Class miRNA
Genome position Chr6:29131127-29131211 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180721
Length 21
Mature sequence(if miRNA) 1 - UAACUCUCUCCCUCAAAGGCU - 21
Stem-loop(if miRNA) --    U     -      A          -   -UAU    AU
  UAAC CUCUC CCUCAA GGCUAUUCUG GUA    GGGU  G
  |||| ||||| |||||| |||||||||| |||    ||||
  AUUG GAGAG GGAGUU CCGAUGAGGU CAU    CCUA  C
AU    C     U      G          U   UGUU    AA
Stem-loop sequence UAACUCUCUCCCUCAAAGGCUAUUCUGGUAUAUGGGUAUGCAAAUCCUUGUUACUUGGAGUAGCCGUUGAGGUGAGAGCGUUAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017754868.1
ncRNA:21   UCGGAAACUCCCUCUCUCAAU   1
  ||||||||||||||||||||*
targets:776   AGCCUUUGAGGGAGAGAGUUU   796

1.0 PREDICTED: Gossypium arboreum DELLA protein RGL1-like (LOC108456273), mRNA DELLA protein RGL1-like(LOC108456273) coding protein psRNATarget