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BaseInfo

ncRNA ID	novel_gar_miR1786
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr5:9002148-9002268 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180721
Length	21
Mature sequence(if miRNA)	1 - UUUAAUGGUAGAAAUGGAUGA - 21
Stem-loop(if miRNA)	--        G   A            --CG      A   ACUAACAAG    -     AG   AUCUAUUU UAU GUUAAAAACUGG    UGUAUG UGG         ACAC UGACA  U   |||||||| ||| ||||||||||||    |||||| |||         |||| |||||  G   UAGGUAAA AUG UAAUUUUUGAUC    ACAUGU AUC         UGUG ACUGU  G AG        G   G            AGAA      A   -AUACUCCA    C     AC
Stem-loop sequence	AUCUAUUUGUAUAGUUAAAAACUGGCGUGUAUGAUGGACUAACAAGACACUGACAAGUGGCAUGUCACGUGUACCUCAUACUAAUGUACAAAGACUAGUUUUUAAUGGUAGAAAUGGAUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017794200.1	ncRNA:21   AGUAGGUAAAGAUGGUAAUUU   1   **|||||||||||||||*||| targets:270   CAAUCCAUUUCUACCAUCAAA   290 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum exocyst complex component SEC6 (LOC108489558), transcript variant X1, mRNA	exocyst complex component SEC6(LOC108489558)	coding protein	psRNATarget
XM_017777106.1	ncRNA:21   AGUAGGUAAAGAUGGUAAUUU   1   *|=||*||||||||||||||| targets:727   GCGUCAAUUUCUACCAUUAAA   747 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum putative FBD-associated F-box protein At5g56700 (LOC108475110), mRNA	putative FBD-associated F-box protein At5g56700(LOC108475110)	coding protein	psRNATarget
XM_017777467.1	ncRNA:21   AGUAGGUAAAGAUGGUAAUUU   1   *|*||*||||||||||||||| targets:262   GCUUCAAUUUCUACCAUUAAA   282 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum F-box protein At4g22280-like (LOC108475495), transcript variant X2, mRNA	F-box protein At4g22280-like(LOC108475495)	coding protein	psRNATarget
XM_017777465.1	ncRNA:21   AGUAGGUAAAGAUGGUAAUUU   1   *|*||*||||||||||||||| targets:370   GCUUCAAUUUCUACCAUUAAA   390 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum F-box protein At4g22280-like (LOC108475495), transcript variant X1, mRNA	F-box protein At4g22280-like(LOC108475495)	coding protein	psRNATarget
XM_017760336.1	ncRNA:21   AGUAGGUAAAGAUGGUAAUUU   1   |||||=||||||||=|||||| targets:2189   UCAUCUAUUUCUACUAUUAAA   2209 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X1, mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC108460726)	coding protein	psRNATarget
XM_017760338.1	ncRNA:21   AGUAGGUAAAGAUGGUAAUUU   1   |||||=||||||||=|||||| targets:2285   UCAUCUAUUUCUACUAUUAAA   2305 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X2, mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC108460726)	coding protein	psRNATarget
XM_017757759.1	ncRNA:21   AGUAGGUAAAGAUGGUAAUUU   1   |=||=|||||||||=|||||| targets:1487   UUAUUCAUUUCUACUAUUAAA   1507 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X2, mRNA	uncharacterized LOC108458388(LOC108458388)	coding protein	psRNATarget
XM_017757758.1	ncRNA:21   AGUAGGUAAAGAUGGUAAUUU   1   |=||=|||||||||=|||||| targets:1547   UUAUUCAUUUCUACUAUUAAA   1567 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X1, mRNA	uncharacterized LOC108458388(LOC108458388)	coding protein	psRNATarget