Search result

BaseInfo

ncRNA ID	novel_gar_miR1784
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr1:110507987-110508130 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180721
Length	21
Mature sequence(if miRNA)	124 - UUGACAGAAGGACCAAUUUGC - 144
Stem-loop(if miRNA)	--       A    U         -    -           U U           G GG   -   AAAUA    G   AAAUUGG CUUU CUGUUAGAA UUUU UCCAUUUCUAU G UAAAAACUGGU U  CUA GCA     AUCA A   ||||||| |||| ||||||||| |||| ||||||||||| | ||||||||||| |  ||| |||     |||| U   UUUAACC GGAA GACAGUUUU AAAA AGGUAAAGAUA C AUUUUUGACUA G  GAU UGU     UGGU C CG       A    -         U    C           U C           G --   A   ---GG    A
Stem-loop sequence	AAAUUGGACUUUUCUGUUAGAAUUUUUCCAUUUCUAUUGUUAAAAACUGGUGUGGCUAGCAAAAUAAUCAGAUCAUGGUGGUGUAUAGGGAUCAGUUUUUACCUAUAGAAAUGGACAAAAUUUUUGACAGAAGGACCAAUUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017754589.1	ncRNA:21   CGUUUAACCAGGAAGACAGUU   1   *||||*||||||||||||=|| targets:1494   ACAAACUGGUCCUUCUGUUAA   1514 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum transcription factor PIF4-like (LOC108455997), mRNA	transcription factor PIF4-like(LOC108455997)	coding protein	psRNATarget