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BaseInfo

ncRNA ID	novel_gar_miR1782
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr11:102745835-102745933 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180721
Length	21
Mature sequence(if miRNA)	1 - UUUUGGAAGAAUUUCAGCUGG - 21
Stem-loop(if miRNA)	--          A             U C        -----       AGC   UUUUGGAAGA UUUCAGCUGGUUG G CACCAAUG     GUAGAAC   U   |||||||||| ||||||||||||| | ||||||||     |||||||   AAAACCUUCU AAGGUUGGCCAAC C GUGGUUAC     UAUUUUG   G CU          C             U A        AUGAU       GGC
Stem-loop sequence	UUUUGGAAGAAUUUCAGCUGGUUGUGCCACCAAUGGUAGAACAGCUGCGGGUUUUAUUAGUACAUUGGUGACUCAACCGGUUGGAACUCUUCCAAAAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017790499.1	ncRNA:21   GGUCGACUUUAAGAAGGUUUU   1   ||||||||||||||*|||||| targets:850   CCAGCUGAAAUUCUGCCAAAA   870 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum glycerol kinase (LOC108486443), mRNA	glycerol kinase(LOC108486443)	coding protein	psRNATarget
XM_017759093.1	ncRNA:21   GGUCGACUUUAAGAAGGUUUU   1   |=||||*|||||||*|||||| targets:21   CUAGCUAAAAUUCUCCCAAAA   41 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum probable carboxylesterase 18 (LOC108459693), mRNA	probable carboxylesterase 18(LOC108459693)	coding protein	psRNATarget
XM_017782694.1	ncRNA:21   GGUCGACUUUAAGAAGGUUUU   1   *=||||*|*|||||||||||| targets:1224   GUAGCUAAUAUUCUUCCAAAA   1244 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum caffeoylshikimate esterase (LOC108479867), mRNA	caffeoylshikimate esterase(LOC108479867)	coding protein	psRNATarget
XM_017776345.1	ncRNA:21   GGUCGACUUUAAGAAGGUUUU   1   *|=*||*|||||||||||||| targets:69   GCGCCUCAAAUUCUUCCAAAA   89 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum protein TIFY 4B-like (LOC108474429), transcript variant X4, mRNA	protein TIFY 4B-like(LOC108474429)	coding protein	psRNATarget
XM_017776344.1	ncRNA:21   GGUCGACUUUAAGAAGGUUUU   1   *|=*||*|||||||||||||| targets:48   GCGCCUCAAAUUCUUCCAAAA   68 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum protein TIFY 4B-like (LOC108474429), transcript variant X3, mRNA	protein TIFY 4B-like(LOC108474429)	coding protein	psRNATarget
XM_017776343.1	ncRNA:21   GGUCGACUUUAAGAAGGUUUU   1   *|=*||*|||||||||||||| targets:47   GCGCCUCAAAUUCUUCCAAAA   67 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum protein TIFY 4B-like (LOC108474429), transcript variant X2, mRNA	protein TIFY 4B-like(LOC108474429)	coding protein	psRNATarget
XM_017776342.1	ncRNA:21   GGUCGACUUUAAGAAGGUUUU   1   *|=*||*|||||||||||||| targets:48   GCGCCUCAAAUUCUUCCAAAA   68 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum protein TIFY 4B-like (LOC108474429), transcript variant X1, mRNA	protein TIFY 4B-like(LOC108474429)	coding protein	psRNATarget