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BaseInfo

ncRNA ID novel_gar_miR1781
Species Gossypium arboreum
Class miRNA
Genome position Chr4:41502789-41502885 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180721
Length 19
Mature sequence(if miRNA) 79 - AAGUCAUUUUUCAGAAAAG - 97
Stem-loop(if miRNA) --UAAA                 GUCAACGGAAAA           UU
      UGAAAAAUGACUUAUAU            UAAGUCAUUUU  U
      |||||||||||||||||            |||||||||||  U
      ACUUUUUACUGAAUAUG            AUUCAGUAAAA  U
GAAAAG                 AAAAAUUUUCUC           UG
Stem-loop sequence UAAAUGAAAAAUGACUUAUAUGUCAACGGAAAAUAAGUCAUUUUUUUUUGUAAAAUGACUUACUCUUUUAAAAAGUAUAAGUCAUUUUUCAGAAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017768371.1
ncRNA:19   GAAAAGACUUUUUACUGAA   1
  **||*||||||||||||||
targets:669   GGUUACUGAAAAAUGACUU   687

3.0 PREDICTED: Gossypium arboreum uncharacterized LOC108467654 (LOC108467654), mRNA uncharacterized LOC108467654(LOC108467654) coding protein psRNATarget