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BaseInfo

ncRNA ID	novel_gar_miR1776
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr4:120630165-120630258 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180721
Length	22
Mature sequence(if miRNA)	1 - UUGGUUUUUGCUGUUGUUAGUC - 22
Stem-loop(if miRNA)	--     UU                   -UAAC   UUUCUUGUUCU   UUGGU  UUGCUGUUGUUAGUCUUUU     CUU           U   |||||  |||||||||||||||||||     |||           C   AACCA  AACGACAACAAUCAGAAAA     GAG           U GA     UC                   CUAAU   UCCUUUGUCUU
Stem-loop sequence	UUGGUUUUUGCUGUUGUUAGUCUUUUUAACCUUUUUCUUGUUCUUCUUUCUGUUUCCUGAGUAAUCAAAAGACUAACAACAGCAACUACCAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017794484.1	ncRNA:22   CUGAUUGUUGUCGUUUUUGGUU   1   *||*|||||||||||||*|||| targets:938   CACCAACAACAGCAAAACCCAA   959 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-14-like (LOC108489754), mRNA	homeobox-leucine zipper protein ATHB-14-like(LOC108489754)	coding protein	psRNATarget
XM_017753624.1	ncRNA:22   CUGAUUGUUGUCGUUUUUGGUU   1   *|**||||||||=||||||||| targets:1671   AAAGAACAACAGUAAAAACCAA   1692 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum receptor-like kinase TMK4 (LOC108454991), mRNA	receptor-like kinase TMK4(LOC108454991)	coding protein	psRNATarget
XM_017756782.1	ncRNA:22   CUGA-UUGUUGUCGUUUUUGGUU   1   **||-||*||||||||||||||| targets:30   ACCUCAAAAACAGCAAAAACCAA   52 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum AT-hook motif nuclear-localized protein 14-like (LOC108457701), transcript variant X1, mRNA	AT-hook motif nuclear-localized protein 14-like(LOC108457701)	coding protein	psRNATarget
XM_017756783.1	ncRNA:22   CUGA-UUGUUGUCGUUUUUGGUU   1   **||-||*||||||||||||||| targets:31   ACCUCAAAAACAGCAAAAACCAA   53 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum AT-hook motif nuclear-localized protein 14-like (LOC108457701), transcript variant X2, mRNA	AT-hook motif nuclear-localized protein 14-like(LOC108457701)	coding protein	psRNATarget