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BaseInfo

ncRNA ID novel_gar_miR1775
Species Gossypium arboreum
Class miRNA
Genome position Chr4:116587712-116587799 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180721
Length 21
Mature sequence(if miRNA) 1 - UUUUUGAACUUGGCAAAUGUA - 21
Stem-loop(if miRNA) --               A      A        -   AUUUUCA G
  UUUUUGAACUUGGCA AUGUAA AGUUUGGU GUG       G U
  ||||||||||||||| |||||| |||||||| |||       |
  AGAAGCUUGAACUGU UACAUU UCAAAUUA UAC       C G
UC               C      G        A   ---GGUG A
Stem-loop sequence UUUUUGAACUUGGCAAAUGUAAAAGUUUGGUGUGAUUUUCAGGUGACGUGGCAUAAUUAAACUGUUACAUCUGUCAAGUUCGAAGACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017776154.1
ncRNA:21   AUGUAAACGGUUCAAGUUUUU   1
  |*||||||||||||||=|||*
targets:2312   UCCAUUUGCCAAGUUCGAAAU   2332

2.5 PREDICTED: Gossypium arboreum DNA replication licensing factor MCM7 (LOC108474221), mRNA DNA replication licensing factor MCM7(LOC108474221) coding protein psRNATarget
XM_017789575.1
ncRNA:21   AUGUAAACGGUUCAAGUUUUU   1
  ***|||||||||*||||||||
targets:409   GCGAUUUGCCAACUUCAAAAA   429

2.5 PREDICTED: Gossypium arboreum LOB domain-containing protein 1-like (LOC108485730), mRNA LOB domain-containing protein 1-like(LOC108485730) coding protein psRNATarget