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BaseInfo

ncRNA ID novel_gar_miR1774
Species Gossypium arboreum
Class miRNA
Genome position Chr3:71550737-71550808 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180721
Length 21
Mature sequence(if miRNA) 52 - UGACAUGGCAAAAAUGCUCCC - 72
Stem-loop(if miRNA) --           A  CA   A     UA   -  A
  GAGUGUUUUUG CA  UCA CAAAA  CGU CC U
  ||||||||||| ||  ||| |||||  ||| || G
  CUCGUAAAAAC GU  AGU GUUUU  GCG GG A
CC           G  AC   C     UA   U  G
Stem-loop sequence GAGUGUUUUUGACACAUCAACAAAAUACGUCCAUGAGGGUGCGAUUUUUGCUGACAUGGCAAAAAUGCUCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017776740.1
ncRNA:21   CCCUCGUAAAAACGGUACAGU   1
  ***||||||||||||||||=|
targets:1303   UUUAGCAUUUUUGCCAUGUUA   1323

2.5 PREDICTED: Gossypium arboreum bifunctional phosphatase IMPL2, chloroplastic (LOC108474730), mRNA bifunctional phosphatase IMPL2, chloroplastic(LOC108474730) coding protein psRNATarget