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BaseInfo

ncRNA ID novel_gar_miR1768
Species Gossypium arboreum
Class miRNA
Genome position Chr2:95315909-95315965 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180721
Length 22
Mature sequence(if miRNA) 1 - UAUGGGGUCACAUUUUUCGGUU - 22
Stem-loop(if miRNA) --UAUG    C       U     A   G
      GGGU ACAUUUU CGGUU GUU U
      |||| ||||||| ||||| |||
      UUUA UGUAAGA GCCAA UAA A
UUCUGA    A       -     G   A
Stem-loop sequence UAUGGGGUCACAUUUUUCGGUUAGUUGUAAAAUGAACCGAGAAUGUAAUUUAGUCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017792084.1
ncRNA:22   UUGGCUUUUUACACUGGGGUAU   1
  ||||||=|||||||||||||||
targets:3762   AACCGAGAAAUGUGACCCCAUA   3783

1.0 PREDICTED: Gossypium arboreum uncharacterized LOC108487715 (LOC108487715), mRNA uncharacterized LOC108487715(LOC108487715) coding protein psRNATarget
XM_017762695.1
ncRNA:22   UUGGCUUUUUACACUGGGGUAU   1
  =||*||||||||||||||*|||
targets:3474   GACAGAAAAAUGUGACCCGAUA   3495

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108462793 (LOC108462793), partial mRNA uncharacterized LOC108462793(LOC108462793) coding protein psRNATarget