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BaseInfo

ncRNA ID novel_gar_miR1750
Species Gossypium arboreum
Class miRNA
Genome position Chr13:22639826-22639901 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180721
Length 21
Mature sequence(if miRNA) 56 - CGAGCCGAAUCAAUAUCACUC - 76
Stem-loop(if miRNA) --         C   U    AU   ----     UCUGUA
  GUGAUAUUG UUC GCUC  CUU    CUUUC      A
  ||||||||| ||| ||||  |||    |||||
  CACUAUAAC AAG CGAG  GAA    GAAAG      U
CU         U   C    CG   CUUU     UCUCCC
Stem-loop sequence GUGAUAUUGCUUCUGCUCAUCUUCUUUCUCUGUAAUCCCUCUGAAAGUUUCAAGGCGAGCCGAAUCAAUAUCACUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017789517.1
ncRNA:21   CUCACUAUAACUAAGCCGAGC   1
  |||||||||||=||||||||*
targets:508   GAGUGAUAUUGGUUCGGCUCA   528

2.5 PREDICTED: Gossypium arboreum nodulation-signaling pathway 2 protein-like (LOC108485665), mRNA nodulation-signaling pathway 2 protein-like(LOC108485665) coding protein psRNATarget
XM_017750598.1
ncRNA:21   CUCACUAUAACUAAGCCGAGC   1
  |=|||||||||=||||||||*
targets:383   GGGUGAUAUUGGUUCGGCUCA   403

2.5 PREDICTED: Gossypium arboreum nodulation-signaling pathway 2 protein (LOC108452807), mRNA nodulation-signaling pathway 2 protein(LOC108452807) coding protein psRNATarget