Search result

BaseInfo

ncRNA ID	novel_gar_miR1748
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr5:51687810-51687903 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029586
Length	24
Mature sequence(if miRNA)	71 - AUAGGCAACUUAGAUUUGACGUGU - 94
Stem-loop(if miRNA)	--AUAGGC           G    GU        AGA    GCCA   A         AACUUAGAUUU ACGU  UAAAAAAU   UAGU    UUA A         ||||||||||| ||||  ||||||||   ||||    ||| A         UUGAAUCUAGA UGCA  AUUUUUUA   AUCG    AAU U UAUACUUU           A    --        ---    AAAG   U
Stem-loop sequence	AUAGGCAACUUAGAUUUGACGUGUUAAAAAAUAGAUAGUGCCAUUAAAAUUUAAGAAAGCUAAUUUUUUAACGUAAGAUCUAAGUUUUUCAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017749165.1	ncRNA:24   UGUGCAGUUUAGAUUCAACGGAUA   1   |==|-|||||*||=|||||||||| targets:3390   AUGC-UCAAAGCUGAGUUGCCUAU   3412 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum putative disease resistance RPP13-like protein 1 (LOC108451479), mRNA	putative disease resistance RPP13-like protein 1(LOC108451479)	coding protein	psRNATarget
XM_017747423.1	ncRNA:24   UGUGCAGUUUAGAUUCAACGGAUA   1   |==|-|||||*||=|||||||||| targets:3170   AUGC-UCAAAGCUGAGUUGCCUAU   3192 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum putative disease resistance protein RGA1 (LOC108450008), transcript variant X2, mRNA	putative disease resistance protein RGA1(LOC108450008)	coding protein	psRNATarget
XM_017747422.1	ncRNA:24   UGUGCAGUUUAGAUUCAACGGAUA   1   |==|-|||||*||=|||||||||| targets:3534   AUGC-UCAAAGCUGAGUUGCCUAU   3556 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum putative disease resistance protein RGA1 (LOC108450008), transcript variant X1, mRNA	putative disease resistance protein RGA1(LOC108450008)	coding protein	psRNATarget
XM_017789710.1	ncRNA:24   UGUGCAGUUUAGAUUCAACGGAUA   1   *==|-|||||*||=|||||||||| targets:677   CUGC-UCAAAGCUGAGUUGCCUAU   699 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum putative disease resistance protein RGA3 (LOC108485864), mRNA	putative disease resistance protein RGA3(LOC108485864)	coding protein	psRNATarget
XM_017754029.1	ncRNA:24   UGUG-CAGUUUAGAUUCAACGGAUA   1   =|==-|||*|=|||||||||||||* targets:2200   GCGUAGUCCAGUCUAAGUUGCCUAA   2224 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum crooked neck-like protein 1 (LOC108455472), mRNA	crooked neck-like protein 1(LOC108455472)	coding protein	psRNATarget