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BaseInfo

ncRNA ID	ath-miR8175
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr2:3740797-3740985 [+]
Reference genome	TAIR10
Source	miRBase
Length	20
Mature sequence(if miRNA)	142 - GAUCCCCGGCAACGGCGCCA - 161
Stem-loop(if miRNA)	A      C                A                 CCCGGGUC     C      G                  UAGUACAA CUUAAGGC AUUUGA CUAUAUCAAAUUUGGC CCGUUGCCGGGGAUCGA        ACCCG GUGACA GCGGGAAUACUUACCACU        C |||||||| |||||| |||||||||||||||| |||||||||||||||||        ||||| |||||| ||||||||||||||||||        G GAAUUCCG UAAACU GAUAUAGUUUAAACCG GGCAACGGCCCCUAGCU        UGGGC CACUGU CGCUCUUAUGAAUGGUGA        A         C      C                C                 --------     U      A                  UAUAACCC
Stem-loop sequence	CUUAAGGCAAUUUGACCUAUAUCAAAUUUGGCACCGUUGCCGGGGAUCGACCCGGGUCACCCGCGUGACAGGCGGGAAUACUUACCACUUAGUACAACGACCCAAUAUAGUGGUAAGUAUUCUCGCAUGUCACUCGGGUUCGAUCCCCGGCAACGGCGCCAAAUUUGAUAUAGCUCAAAUCGCCUUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001339159.1	ncRNA:20   ACCGCGGCAACGGCCCCUAG   1   |||||||||||||||||||| targets:70   UGGCGCCGUUGCCGGGGAUC   89 Target Full Sequence	0.0	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT3G44580)	coding protein	psRNATarget

Reference

1	PMID:24119003 "Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots"; Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA; BMC Genomics. 14:701(2013).