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BaseInfo

ncRNA ID	novel_gar_miR1738
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr12:24627112-24627248 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180721
Length	21
Mature sequence(if miRNA)	1 - AAUUUCAUCCAUUUGUACUGU - 21
Stem-loop(if miRNA)	--     C        G                 G -GA   AUAGAAUA   CA    GUG        C   AAUUU AUCCAUUU UACUGUUAAAAAUUGGC U   UUG        AAC  GAUA   AUAUGUGG G   ||||| |||||||| ||||||||||||||||| |   |||        |||  ||||   ||||||||   UUAAA UAGGUAAA AUGAUAAUUUUUGACUG G   AAC        UUG  CUAU   UGUGCACC U UC     U        G                 G AGG   --AUGCAG   UA    --A        G
Stem-loop sequence	AAUUUCAUCCAUUUGUACUGUUAAAAAUUGGCGUGAUUGAUAGAAUAAACCAGAUAGUGAUAUGUGGCGUGCCACGUGUAUAUCAUGUUGACGUACAAGGAGGGUCAGUUUUUAAUAGUAGAAAUGGAUUAAAUUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017792872.1	ncRNA:21   UGUCAUGUUUACCUACUUUAA   1   ||||||*|||||||||||||| targets:13   ACAGUAGAAAUGGAUGAAAUU   33 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum senescence-associated carboxylesterase 101-like (LOC108488581), mRNA	senescence-associated carboxylesterase 101-like(LOC108488581)	coding protein	psRNATarget
XM_017768158.1	ncRNA:21   UGUCAUGUUUACCUACUUUAA   1   |*||||*|||||||||||||| targets:1733   AGAGUAAAAAUGGAUGAAAUU   1753 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum protein trichome birefringence-like 5 (LOC108467517), transcript variant X3, mRNA	protein trichome birefringence-like 5(LOC108467517)	coding protein	psRNATarget
XM_017768156.1	ncRNA:21   UGUCAUGUUUACCUACUUUAA   1   |*||||*|||||||||||||| targets:1736   AGAGUAAAAAUGGAUGAAAUU   1756 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum protein trichome birefringence-like 5 (LOC108467517), transcript variant X1, mRNA	protein trichome birefringence-like 5(LOC108467517)	coding protein	psRNATarget
XM_017768157.1	ncRNA:21   UGUCAUGUUUACCUACUUUAA   1   |*||||*|||||||||||||| targets:1849   AGAGUAAAAAUGGAUGAAAUU   1869 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum protein trichome birefringence-like 5 (LOC108467517), transcript variant X2, mRNA	protein trichome birefringence-like 5(LOC108467517)	coding protein	psRNATarget
XM_017755316.1	ncRNA:21   UGUCAUGUUUACCUACUUUAA   1   |||*||*|||||||||||||| targets:1329   ACAAUAGAAAUGGAUGAAAUU   1349 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum lon protease-like (LOC108456709), mRNA	lon protease-like(LOC108456709)	coding protein	psRNATarget
XM_017776642.1	ncRNA:21   UGUCAUGUUUACCUACUUUAA   1   |=|*||*|||||||||||||| targets:2046   AUAAUAGAAAUGGAUGAAAUU   2066 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum uncharacterized protein At1g04910-like (LOC108474647), mRNA	uncharacterized protein At1g04910-like(LOC108474647)	coding protein	psRNATarget
XM_017789410.1	ncRNA:21   UGUCAUGUUUACCUACUUUAA   1   **||*|||||||||||||||* targets:1655   UAAGGACAAAUGGAUGAAAUC   1675 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum uncharacterized GPI-anchored protein At1g61900-like (LOC108485554), mRNA	uncharacterized GPI-anchored protein At1g61900-like(LOC108485554)	coding protein	psRNATarget
XM_017769062.1	ncRNA:21   UGUCAUGUUUACCUACUUUAA   1   ||||||*||||*||||||||| targets:1592   ACAGUAAAAAUAGAUGAAAUU   1612 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108468182 (LOC108468182), mRNA	uncharacterized LOC108468182(LOC108468182)	coding protein	psRNATarget
XM_017769675.1	ncRNA:21   UGUCAUGUUUACCUACUUUAA   1   ||||||*||||*||||||||| targets:1071   ACAGUAGAAAUAGAUGAAAUU   1091 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108468815 (LOC108468815), transcript variant X1, mRNA	uncharacterized LOC108468815(LOC108468815)	coding protein	psRNATarget
XM_017769676.1	ncRNA:21   UGUCAUGUUUACCUACUUUAA   1   ||||||*||||*||||||||| targets:1071   ACAGUAGAAAUAGAUGAAAUU   1091 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108468815 (LOC108468815), transcript variant X2, mRNA	uncharacterized LOC108468815(LOC108468815)	coding protein	psRNATarget
XM_017751149.1	ncRNA:21   UGUCAUGUUUACCUACUUUAA   1   |=||||*||||*||||||||| targets:664   AUAGUAGAAAUAGAUGAAAUU   684 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein-L-isoaspartate O-methyltransferase 1 (LOC108453182), transcript variant X2, mRNA	protein-L-isoaspartate O-methyltransferase 1(LOC108453182)	coding protein	psRNATarget
XM_017757940.1	ncRNA:21   UGUCAUGUUUACCUACUUUAA   1   |*||||*||||*||||||||| targets:1145   AGAGUAAAAAUUGAUGAAAUU   1165 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108458516 (LOC108458516), mRNA	uncharacterized LOC108458516(LOC108458516)	coding protein	psRNATarget
XM_017787689.1	ncRNA:21   UGUCAUGUUUACCUACUUUAA   1   ==|||==|||||||||||||* targets:320   GUAGUGUAAAUGGAUGAAAUA   340 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum ABC transporter G family member 3 (LOC108484061), transcript variant X2, mRNA	ABC transporter G family member 3(LOC108484061)	coding protein	psRNATarget
XM_017787688.1	ncRNA:21   UGUCAUGUUUACCUACUUUAA   1   ==|||==|||||||||||||* targets:434   GUAGUGUAAAUGGAUGAAAUA   454 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum ABC transporter G family member 3 (LOC108484061), transcript variant X1, mRNA	ABC transporter G family member 3(LOC108484061)	coding protein	psRNATarget
XM_017776106.1	ncRNA:21   UGUC-AUGUUUACCUACUUUAA   1   |=||-||*|||||||||||||| targets:761   AUAGGUAGAAAUGGAUGAAAUU   782 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum serine/threonine-protein kinase D6PKL1 (LOC108474182), transcript variant X2, mRNA	serine/threonine-protein kinase D6PKL1(LOC108474182)	coding protein	psRNATarget
XM_017755575.1	ncRNA:21   UGUCAUGUUUACCUACUUUAA   1   |||*||*|||||||||||||* targets:1846   ACAAUAGAAAUGGAUGAAAUC   1866 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum heat shock factor protein HSF8-like (LOC108456855), mRNA	heat shock factor protein HSF8-like(LOC108456855)	coding protein	psRNATarget
XM_017794169.1	ncRNA:21   UGUCAUGUUUACCUACUUUAA   1   *=|*|=|=||||||||||||| targets:3651   UUAAUGCGAAUGGAUGAAAUU   3671 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum serine/threonine-protein kinase-like protein ACR4 (LOC108489543), mRNA	serine/threonine-protein kinase-like protein ACR4(LOC108489543)	coding protein	psRNATarget
XM_017775887.1	ncRNA:21   UGUCAUGUUUACCUACUUUAA   1   *==||*||||||||||||||* targets:793   CUGGUCCAAAUGGAUGAAAUA   813 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum iron-sulfur assembly protein IscA-like 1, mitochondrial (LOC108474020), transcript variant X3, mRNA	iron-sulfur assembly protein IscA-like 1, mitochondrial(LOC108474020)	coding protein	psRNATarget
XM_017775884.1	ncRNA:21   UGUCAUGUUUACCUACUUUAA   1   *==||*||||||||||||||* targets:847   CUGGUCCAAAUGGAUGAAAUA   867 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum iron-sulfur assembly protein IscA-like 1, mitochondrial (LOC108474020), transcript variant X1, mRNA	iron-sulfur assembly protein IscA-like 1, mitochondrial(LOC108474020)	coding protein	psRNATarget
XM_017775885.1	ncRNA:21   UGUCAUGUUUACCUACUUUAA   1   *==||*||||||||||||||* targets:1072   CUGGUCCAAAUGGAUGAAAUA   1092 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum iron-sulfur assembly protein IscA-like 1, mitochondrial (LOC108474020), transcript variant X2, mRNA	iron-sulfur assembly protein IscA-like 1, mitochondrial(LOC108474020)	coding protein	psRNATarget