Search result

BaseInfo

ncRNA ID	novel_gar_miR1737
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr12:24627122-24627238 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180721;SRR1029587
Length	24
Mature sequence(if miRNA)	1 - AUUUGUACUGUUAAAAAUUGGCGU - 24
Stem-loop(if miRNA)	--    G                 G -GA   AUAGAAUA   CA    GUG        C   AUUU UACUGUUAAAAAUUGGC U   UUG        AAC  GAUA   AUAUGUGG G   |||| ||||||||||||||||| |   |||        |||  ||||   ||||||||   UAAA AUGAUAAUUUUUGACUG G   AAC        UUG  CUAU   UGUGCACC U GG    G                 G AGG   --AUGCAG   UA    --A        G
Stem-loop sequence	AUUUGUACUGUUAAAAAUUGGCGUGAUUGAUAGAAUAAACCAGAUAGUGAUAUGUGGCGUGCCACGUGUAUAUCAUGUUGACGUACAAGGAGGGUCAGUUUUUAAUAGUAGAAAUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017777482.1	ncRNA:24   UGCGGUUAAAAAUUGUCAUGUUUA   1   |*|==||||||||||||||||||| targets:33   AAGUUAAUUUUUAACAGUACAAAU   56 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum uncharacterized LOC108475513 (LOC108475513), mRNA	uncharacterized LOC108475513(LOC108475513)	coding protein	psRNATarget
XM_017754697.1	ncRNA:24   UGCGGUUAAAAAUUGUCAUGUUUA   1   |=||||||||||||=||||||||| targets:1504   AUGCCAAUUUUUAAUAGUACAAAU   1527 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X2, mRNA	uncharacterized protein DDB_G0271670(LOC108456101)	coding protein	psRNATarget
XM_017754696.1	ncRNA:24   UGCGGUUAAAAAUUGUCAUGUUUA   1   |=||||||||||||=||||||||| targets:1504   AUGCCAAUUUUUAAUAGUACAAAU   1527 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X1, mRNA	uncharacterized protein DDB_G0271670(LOC108456101)	coding protein	psRNATarget
XM_017783891.1	ncRNA:24   UGCGGUUAAAAAUUGUCAUGUUUA   1   |**|=||||||||||=|||||||| targets:901   AGACUAAUUUUUAACGGUACAAAU   924 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum nudix hydrolase 25 (LOC108480791), mRNA	nudix hydrolase 25(LOC108480791)	coding protein	psRNATarget
XM_017769675.1	ncRNA:24   UGCGGUUAAAAAUUGUCAUGUUUA   1   =**||||||||||||||||*|||| targets:1058   GGACCAAUUUUUAACAGUAGAAAU   1081 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized LOC108468815 (LOC108468815), transcript variant X1, mRNA	uncharacterized LOC108468815(LOC108468815)	coding protein	psRNATarget
XM_017769676.1	ncRNA:24   UGCGGUUAAAAAUUGUCAUGUUUA   1   =**||||||||||||||||*|||| targets:1058   GGACCAAUUUUUAACAGUAGAAAU   1081 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized LOC108468815 (LOC108468815), transcript variant X2, mRNA	uncharacterized LOC108468815(LOC108468815)	coding protein	psRNATarget
XM_017792872.1	ncRNA:23   GCGGUUAAAAAUUGUCAUGUUUA   1   **|=||||||||||||||*|||| targets:1   GACUAAUUUUUAACAGUAGAAAU   23 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum senescence-associated carboxylesterase 101-like (LOC108488581), mRNA	senescence-associated carboxylesterase 101-like(LOC108488581)	coding protein	psRNATarget
XM_017769062.1	ncRNA:24   UGCGGUUAAAAAUUGUCAUGUUUA   1   =*|==|=||||||||||||*|||| targets:1579   GGGUUAGUUUUUAACAGUAAAAAU   1602 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108468182 (LOC108468182), mRNA	uncharacterized LOC108468182(LOC108468182)	coding protein	psRNATarget