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BaseInfo

ncRNA ID	novel_gar_miR1735
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr1:82783307-82783514 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180721
Length	24
Mature sequence(if miRNA)	1 - AUUUACUCUUUGAUCUAACGUACA - 24
Stem-loop(if miRNA)	--   A         -   C   CUA  CA            -                 U            G GG   -   GAAUAACC    -  U    C    U   UAC UUAGAUUAA GAG AAA   GA  UUUUUGUUAAAA UUUCAUCCAUUUCUACU UUAAAAAUUAAU C  CUG ACG        AAAU AG UACA GUGG G   ||| ||||||||| ||| |||   ||  |||||||||||| ||||||||||||||||| |||||||||||| |  ||| |||        |||| || |||| ||||   AUG AAUCUAGUU CUC UUU   CU  AAAAACAAUUUU AAAGUAGGUAAAGAUGA AAUUUUUAGUUA G  GAU UGC        UUUA UC AUGU CACC U AC   C         U   A   -AC  AG            U                 U            G --   A   -----AAU    C  C    A    A
Stem-loop sequence	UACAUUAGAUUAAGAGCAAACUAGACAUUUUUGUUAAAAUUUCAUCCAUUUCUACUUUUAAAAAUUAAUGCGGCUGACGGAAUAACCAAAUAGUUACACGUGGUGUACCACAUGUACCUCAUUUUAACGUAUAGGGAUUGAUUUUUAAUAGUAGAAAUGGAUGAAAUUUUUAACAAAAAGAUCCAUUUACUCUUUGAUCUAACGUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017752094.1	ncRNA:24   ACAUGCAAUCUAGUUUCUCAUUUA   1   |*|||||||||||||||||||||| targets:1110   UAUACGUUAGAUCAAAGAGUAAAU   1133 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum universal stress protein PHOS32-like (LOC108453792), transcript variant X3, mRNA	universal stress protein PHOS32-like(LOC108453792)	coding protein	psRNATarget
XM_017755316.1	ncRNA:24   ACAUGCAAUCUAGUUUCUCAUUUA   1   ||||-||||||||||||||||||* targets:1196   UGUA-GUUAGAUCAAAGAGUAAAC   1218 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum lon protease-like (LOC108456709), mRNA	lon protease-like(LOC108456709)	coding protein	psRNATarget
XM_017786219.1	ncRNA:24   ACAUGCAAUCUAGUUUCUCAUUUA   1   **||=*|||*|||||||||||||| targets:1120   AUUAUAUUAUAUCAAAGAGUAAAU   1143 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum protein bicaudal C homolog 1-A-like (LOC108483037), mRNA	protein bicaudal C homolog 1-A-like(LOC108483037)	coding protein	psRNATarget
XM_017777449.1	ncRNA:24   ACAUGCAAUCUAGUUUCUCAUUUA   1   *||||||||*|||||||||*|||| targets:1625   AGUACGUUAAAUCAAAGAGCAAAU   1648 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum cytochrome P450 71D10-like (LOC108475481), mRNA	cytochrome P450 71D10-like(LOC108475481)	coding protein	psRNATarget
XM_017786407.1	ncRNA:24   ACAUGCAAUCUAGUUUCUCAUUUA   1   ||*|-|||||||=||||||||||* targets:1452   UGGA-GUUAGAUUAAAGAGUAAAC   1474 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum serine acetyltransferase 4-like (LOC108483085), transcript variant X2, mRNA	serine acetyltransferase 4-like(LOC108483085)	coding protein	psRNATarget
XM_017786487.1	ncRNA:24   ACAUGCAAUCUAGUUUCUCAUUUA   1   ||*|-|||||||=||||||||||* targets:1460   UGGA-GUUAGAUUAAAGAGUAAAC   1482 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum serine acetyltransferase 4-like (LOC108483085), transcript variant X3, mRNA	serine acetyltransferase 4-like(LOC108483085)	coding protein	psRNATarget
XM_017786327.1	ncRNA:24   ACAUGCAAUCUAGUUUCUCAUUUA   1   ||*|-|||||||=||||||||||* targets:1695   UGGA-GUUAGAUUAAAGAGUAAAC   1717 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum serine acetyltransferase 4-like (LOC108483085), transcript variant X1, mRNA	serine acetyltransferase 4-like(LOC108483085)	coding protein	psRNATarget
XM_017754642.1	ncRNA:24   ACAUGCAAUCUAGUUUCUCAUUUA   1   |**|=||||*||=||||||||||| targets:787   UCAAUGUUAAAUUAAAGAGUAAAU   810 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108456052 (LOC108456052), transcript variant X1, mRNA	uncharacterized LOC108456052(LOC108456052)	coding protein	psRNATarget
XM_017754697.1	ncRNA:24   ACAUGCAAUCUAGUUUCUCAUUUA   1   |*||*||||*|||||||||*|||| targets:1366   UAUAAGUUAUAUCAAAGAGCAAAU   1389 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X2, mRNA	uncharacterized protein DDB_G0271670(LOC108456101)	coding protein	psRNATarget
XM_017754696.1	ncRNA:24   ACAUGCAAUCUAGUUUCUCAUUUA   1   |*||*||||*|||||||||*|||| targets:1366   UAUAAGUUAUAUCAAAGAGCAAAU   1389 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X1, mRNA	uncharacterized protein DDB_G0271670(LOC108456101)	coding protein	psRNATarget
XM_017761420.1	ncRNA:24   ACAUGCAAUCUAGUUUCUCAUUUA   1   **||**|||||*|||||||||||| targets:1443   AAUAAAUUAGAACAAAGAGUAAAU   1466 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum alpha-L-fucosidase 3-like (LOC108461552), mRNA	alpha-L-fucosidase 3-like(LOC108461552)	coding protein	psRNATarget
XM_017792380.1	ncRNA:24   ACAUGCAAUCUAGUUUCUCAUUUA   1   |*|||*|*|||||||||||||||* targets:1610   UCUACAUGAGAUCAAAGAGUAAAC   1633 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum probable LRR receptor-like serine/threonine-protein kinase At2g23950 (LOC108488066), mRNA	probable LRR receptor-like serine/threonine-protein kinase At2g23950(LOC108488066)	coding protein	psRNATarget