Search result

BaseInfo

ncRNA ID	novel_gar_miR1734
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr12:112413220-112413284 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180721
Length	20
Mature sequence(if miRNA)	1 - AUUUUUUAGUGGAGUCAUGU - 20
Stem-loop(if miRNA)	--     GU     C  U  C  -----GU    A   AUGGC  CAUUA AG GU AC       CAGC A   |||||  ||||| || || ||       ||||   UACUG  GUGAU UU UA UG       GUUG G UG     AG     U  U  U  AAAAAUU    G
Stem-loop sequence	AUGGCGUCAUUACAGUGUCACGUCAGCAAGGGUUGUUAAAAAGUUAUUUUUUAGUGGAGUCAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017777240.1	ncRNA:20   UGUACUGAGGUGAUUUUUUA   1   |||||=||||||*||||||| targets:1045   ACAUGGCUCCACCAAAAAAU   1064 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum plant UBX domain-containing protein 7-like (LOC108475266), mRNA	plant UBX domain-containing protein 7-like(LOC108475266)	coding protein	psRNATarget
XM_017780856.1	ncRNA:20   UGUA-CUGAGGUGAUUUUUUA   1   *|||-||*||||||||||||| targets:473   UCAUAGAGUCCACUAAAAAAU   493 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum mitochondrial substrate carrier family protein E (LOC108478396), transcript variant X2, mRNA	mitochondrial substrate carrier family protein E(LOC108478396)	coding protein	psRNATarget
XM_017780855.1	ncRNA:20   UGUA-CUGAGGUGAUUUUUUA   1   *|||-||*||||||||||||| targets:476   UCAUAGAGUCCACUAAAAAAU   496 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum mitochondrial substrate carrier family protein E (LOC108478396), transcript variant X1, mRNA	mitochondrial substrate carrier family protein E(LOC108478396)	coding protein	psRNATarget