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BaseInfo

ncRNA ID	novel_gar_miR1732
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr5:57256364-57256531 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029586;SRR3180721
Length	22
Mature sequence(if miRNA)	1 - UAAGUGAAGAAAGAGGUAGGUU - 22
Stem-loop(if miRNA)	--           A     A          -AG   A   UAAGC   --      --      U   -----------     UAAUU    UC   UAAGUGAAGAA GAGGU GGUUUGAAGA   AAG UGG     UGA  GUUUAA  GAGGAA GGU           GAACU     GAGA  A   ||||||||||| ||||| ||||||||||   ||| |||     |||  ||||||  |||||| |||           |||||     ||||   AUUCACUUCUU UUCCG CCAAACUUCU   UUC ACC     ACU  UAGAUU  CUUCUU CCA           UUUGA     CUCU  U UG           -     A          AGA   C   --UAA   UC      UA      U   AGUACACUGCU     ---UC    UC
Stem-loop sequence	UAAGUGAAGAAAGAGGUAGGUUUGAAGAAGAAGAUGGUAAGCUGAGUUUAAGAGGAAUGGUGAACUUAAUUGAGAUCAUCUUCUCCUAGUUUUCGUCACAUGAACCUUUCUUCAUUUAGAUCUUCAAAUCCACCUUAGAUCUUCAAACCAGCCUUUUCUUCACUUAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017756798.1	ncRNA:22   UUGGAUGGAGAAAGAAGUGAAU   1   ||*=|||||||||||||||||= targets:2583   AAGUUACCUCUUUCUUCACUUG   2604 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum pentatricopeptide repeat-containing protein At2g16880 (LOC108457713), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At2g16880(LOC108457713)	coding protein	psRNATarget
XM_017758522.1	ncRNA:22   UUGGAUGGAGAAAGAAGUGAAU   1   *||=*|*||||||||||||||| targets:361   UACUCAACUCUUUCUUCACUUA   382 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum myosin-binding protein 3-like (LOC108459150), transcript variant X3, mRNA	myosin-binding protein 3-like(LOC108459150)	coding protein	psRNATarget
XM_017758516.1	ncRNA:22   UUGGAUGGAGAAAGAAGUGAAU   1   *||=*|*||||||||||||||| targets:361   UACUCAACUCUUUCUUCACUUA   382 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum myosin-binding protein 3-like (LOC108459150), transcript variant X2, mRNA	myosin-binding protein 3-like(LOC108459150)	coding protein	psRNATarget
XM_017758509.1	ncRNA:22   UUGGAUGGAGAAAGAAGUGAAU   1   *||=*|*||||||||||||||| targets:361   UACUCAACUCUUUCUUCACUUA   382 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum myosin-binding protein 3-like (LOC108459150), transcript variant X1, mRNA	myosin-binding protein 3-like(LOC108459150)	coding protein	psRNATarget