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BaseInfo

ncRNA ID	novel_gar_miR1731
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr1:90769115-90769321 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180721
Length	24
Mature sequence(if miRNA)	184 - UAUGAAACUGUAAUUCCACGUCAU - 207
Stem-loop(if miRNA)	--               C     C  UC   AC A    C             C      A          GUGA           U     UCUCCCCAAAAAA   UAUGAAACUGUAAUU CACGU AU  CUA  C UUUU AAUAGGAAAAUGA AAAUCA AUUUUUUCUC    UGAUUUUUAGC UUUUU             A   ||||||||||||||| ||||| ||  |||  | |||| ||||||||||||| |||||| ||||||||||    ||||||||||| |||||   AUACUUUGAUAUUAA GUGCA UA  GAU  G AGAA UUAUCUUUUUACU UUUAGU UAAAAAGGAG    ACUAAAAAUUG AAAAA             A AC               A     A  GA   AA A    A             A      C          ---G           U     UCAACCUAAACUA
Stem-loop sequence	UAUGAAACUGUAAUUCCACGUCAUUCCUAACCAUUUUCAAUAGGAAAAUGACAAAUCAAAUUUUUUCUCGUGAUGAUUUUUAGCUUUUUUUCUCCCCAAAAAAAAAUCAAAUCCAACUAAAAAUGUUAAAAAUCAGGAGGAAAAAUCUGAUUUAUCAUUUUUCUAUUAAAGAAGAAUAGAGAUAACGUGAAAUUAUAGUUUCAUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017763116.1	ncRNA:24   UACUGCACCUUAAUGUCAAAGUAU   1   ||||=|||||=|||*||||||||| targets:3055   AUGAUGUGGAGUUAGAGUUUCAUA   3078 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum pentatricopeptide repeat-containing protein At3g13880 (LOC108463170), mRNA	pentatricopeptide repeat-containing protein At3g13880(LOC108463170)	coding protein	psRNATarget
XM_017793283.1	ncRNA:24   UACU--GCACCUUAAUGUCAAAGUAU   1   |||=--||||||||||||*||||||= targets:7044   AUGGUCCGUGGAAUUACAAUUUCAUG   7069 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum pre-mRNA-processing-splicing factor 8A (LOC108489044), mRNA	pre-mRNA-processing-splicing factor 8A(LOC108489044)	coding protein	psRNATarget