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BaseInfo

ncRNA ID	novel_gar_miR1730
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr1:111006594-111006724 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180721
Length	20
Mature sequence(if miRNA)	112 - AACGGCGUCGUUUUAUAGUG - 131
Stem-loop(if miRNA)	--               U    U   U     ---A      AC    ---  U       A  C   GC   AACGGCGUCGUUUUA AGUG AGA AAAAU    GGUGUU  UGGC   GC UUGCUGA AA GCC  A   ||||||||||||||| |||| ||| |||||    ||||||  ||||   || ||||||| || |||   UUGCUGCGGUAAAGU UUAU UCU UUUUA    CCACAA  AUCG   CG GGCGAUU UU UGG  A UU               -    -   -     AACA      AA    UUG  C       A  C   AA
Stem-loop sequence	AACGGCGUCGUUUUAUAGUGUAGAUAAAAUAGGUGUUACUGGCGCUUUGCUGAAAACGCCGCAAAAGGUCUUAUUAGCGGCGCGUUGCUAAAAACACCACAAAUUUUUCUUAUUUGAAAUGGCGUCGUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017772141.1	ncRNA:20   GUGAUAUUUUGCUGCGGCAA   1   ||*||||||||||||*|||| targets:123   CAAUAUAAAACGACGGCGUU   142 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum receptor homology region, transmembrane domain- and RING domain-containing protein 1-like (LOC108470707), mRNA	receptor homology region, transmembrane domain- and RING domain-containing protein 1-like(LOC108470707)	coding protein	psRNATarget
XM_017788134.1	ncRNA:20   GUGAUAUUUUGCUGCGGCAA   1   *|*|||=||||||||||||* targets:1484   AAGUAUGAAACGACGCCGUA   1503 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum transcription factor bHLH66-like (LOC108484369), mRNA	transcription factor bHLH66-like(LOC108484369)	coding protein	psRNATarget
XM_017788953.1	ncRNA:20   GUGAUAUUUUGCUGCGGCAA   1   *|*|||=||||||||||||* targets:953   AAGUAUGAAACGACGCCGUA   972 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum transcription factor bHLH66-like (LOC108485102), mRNA	transcription factor bHLH66-like(LOC108485102)	coding protein	psRNATarget
XM_017772438.1	ncRNA:20   GUGAUAUUUUGCUGCGGCAA   1   |||*|*|||||||||||||* targets:365   CACAACAAAACGACGCCGUC   384 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum F-box protein At2g26850 (LOC108470914), mRNA	F-box protein At2g26850(LOC108470914)	coding protein	psRNATarget