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BaseInfo

ncRNA ID	novel_gar_miR1726
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr11:68335523-68335613 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180721
Length	19
Mature sequence(if miRNA)	1 - GACAGAAGAUAGAGAGCAC - 19
Stem-loop(if miRNA)	--        -              U  -   UG    ----A        GACAGAAG AUAGAGAGCACAGA GA UGG  UGCA     UUAGGA   |||||||| |||||||||||||| || |||  ||||     |||||G   CUGUCUUC UAUCUCUCGUGUUU CU ACC  ACGU     AGUUCU UA        G              C  C   CU    AACGA
Stem-loop sequence	GACAGAAGAUAGAGAGCACAGAUGAUGGUGUGCAAUUAGGAGUCUUGAAGCAAUGCAUCCCACUCCUUUGUGCUCUCUAUGCUUCUGUCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017750004.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:683   GUGCUCUCUCUCUUCUGUC   701 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 7 (LOC108452234), mRNA	squamosa promoter-binding-like protein 7(LOC108452234)	coding protein	psRNATarget
XM_017775135.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:871   GUGCUCUCUCUCUUCUGUC   889 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 17 (LOC108473521), mRNA	squamosa promoter-binding-like protein 17(LOC108473521)	coding protein	psRNATarget
XM_017781546.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:932   GUGCUCUCUCUCUUCUGUC   950 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108479128), transcript variant X3, mRNA	squamosa promoter-binding-like protein 16(LOC108479128)	coding protein	psRNATarget
XM_017768226.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:1014   GUGCUCUCUCUCUUCUGUC   1032 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108467559), transcript variant X5, mRNA	squamosa promoter-binding-like protein 16(LOC108467559)	coding protein	psRNATarget
XM_017768227.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:1017   GUGCUCUCUCUCUUCUGUC   1035 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108467559), transcript variant X6, mRNA	squamosa promoter-binding-like protein 16(LOC108467559)	coding protein	psRNATarget
XM_017783987.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:924   GUGCUCUCUCUCUUCUGUC   942 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 9 (LOC108480862), mRNA	squamosa promoter-binding-like protein 9(LOC108480862)	coding protein	psRNATarget
XM_017769069.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:1114   GUGCUCUCUCUCUUCUGUC   1132 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108468186), transcript variant X3, mRNA	squamosa promoter-binding-like protein 16(LOC108468186)	coding protein	psRNATarget
XM_017768224.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:1052   GUGCUCUCUCUCUUCUGUC   1070 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108467559), transcript variant X3, mRNA	squamosa promoter-binding-like protein 16(LOC108467559)	coding protein	psRNATarget
XM_017758701.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:912   GUGCUCUCUCUCUUCUGUC   930 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 7 (LOC108459343), transcript variant X2, mRNA	squamosa promoter-binding-like protein 7(LOC108459343)	coding protein	psRNATarget
XM_017781544.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:1106   GUGCUCUCUCUCUUCUGUC   1124 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108479128), transcript variant X1, mRNA	squamosa promoter-binding-like protein 16(LOC108479128)	coding protein	psRNATarget
XM_017768223.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:1111   GUGCUCUCUCUCUUCUGUC   1129 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108467559), transcript variant X2, mRNA	squamosa promoter-binding-like protein 16(LOC108467559)	coding protein	psRNATarget
XM_017758700.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:957   GUGCUCUCUCUCUUCUGUC   975 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 7 (LOC108459343), transcript variant X1, mRNA	squamosa promoter-binding-like protein 7(LOC108459343)	coding protein	psRNATarget
XM_017769068.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:1204   GUGCUCUCUCUCUUCUGUC   1222 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108468186), transcript variant X2, mRNA	squamosa promoter-binding-like protein 16(LOC108468186)	coding protein	psRNATarget
XM_017769067.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:1213   GUGCUCUCUCUCUUCUGUC   1231 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108468186), transcript variant X1, mRNA	squamosa promoter-binding-like protein 16(LOC108468186)	coding protein	psRNATarget
XM_017779909.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:1135   GUGCUCUCUCUCUUCUGUC   1153 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 13A (LOC108477384), mRNA	squamosa promoter-binding-like protein 13A(LOC108477384)	coding protein	psRNATarget
XM_017765900.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:915   GUGCUCUCUCUCUUCUGUC   933 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 9 (LOC108465551), mRNA	squamosa promoter-binding-like protein 9(LOC108465551)	coding protein	psRNATarget
XM_017785312.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:891   GUGCUCUCUCUCUUCUGUC   909 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 6 (LOC108482194), mRNA	squamosa promoter-binding-like protein 6(LOC108482194)	coding protein	psRNATarget
XM_017781545.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:1221   GUGCUCUCUCUCUUCUGUC   1239 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108479128), transcript variant X2, mRNA	squamosa promoter-binding-like protein 16(LOC108479128)	coding protein	psRNATarget
XM_017756867.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:1501   GUGCUCUCUCUCUUCUGUC   1519 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108457744), transcript variant X5, mRNA	squamosa promoter-binding-like protein 2(LOC108457744)	coding protein	psRNATarget
XM_017778559.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:1397   GUGCUCUCUCUCUUCUGUC   1415 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108476362), transcript variant X1, mRNA	squamosa promoter-binding-like protein 2(LOC108476362)	coding protein	psRNATarget
XM_017760108.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:1455   GUGCUCUCUCUCUUCUGUC   1473 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108460571), transcript variant X5, mRNA	squamosa promoter-binding-like protein 2(LOC108460571)	coding protein	psRNATarget
XM_017760107.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:1498   GUGCUCUCUCUCUUCUGUC   1516 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108460571), transcript variant X4, mRNA	squamosa promoter-binding-like protein 2(LOC108460571)	coding protein	psRNATarget
XM_017761788.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:1318   GUGCUCUCUCUCUUCUGUC   1336 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 6 (LOC108461834), mRNA	squamosa promoter-binding-like protein 6(LOC108461834)	coding protein	psRNATarget
XM_017760109.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:1621   GUGCUCUCUCUCUUCUGUC   1639 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108460571), transcript variant X6, mRNA	squamosa promoter-binding-like protein 2(LOC108460571)	coding protein	psRNATarget
XM_017756866.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:1915   GUGCUCUCUCUCUUCUGUC   1933 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108457744), transcript variant X4, mRNA	squamosa promoter-binding-like protein 2(LOC108457744)	coding protein	psRNATarget
XM_017768222.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:1877   GUGCUCUCUCUCUUCUGUC   1895 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108467559), transcript variant X1, mRNA	squamosa promoter-binding-like protein 16(LOC108467559)	coding protein	psRNATarget
XM_017760106.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:1768   GUGCUCUCUCUCUUCUGUC   1786 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108460571), transcript variant X3, mRNA	squamosa promoter-binding-like protein 2(LOC108460571)	coding protein	psRNATarget
XM_017768225.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:1917   GUGCUCUCUCUCUUCUGUC   1935 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108467559), transcript variant X4, mRNA	squamosa promoter-binding-like protein 16(LOC108467559)	coding protein	psRNATarget
XM_017783067.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:1749   GUGCUCUCUCUCUUCUGUC   1767 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 6 (LOC108480171), transcript variant X1, mRNA	squamosa promoter-binding-like protein 6(LOC108480171)	coding protein	psRNATarget
XM_017760103.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:1890   GUGCUCUCUCUCUUCUGUC   1908 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108460571), transcript variant X1, mRNA	squamosa promoter-binding-like protein 2(LOC108460571)	coding protein	psRNATarget
XM_017783069.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:1928   GUGCUCUCUCUCUUCUGUC   1946 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 6 (LOC108480171), transcript variant X3, mRNA	squamosa promoter-binding-like protein 6(LOC108480171)	coding protein	psRNATarget
XM_017783068.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:2033   GUGCUCUCUCUCUUCUGUC   2051 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 6 (LOC108480171), transcript variant X2, mRNA	squamosa promoter-binding-like protein 6(LOC108480171)	coding protein	psRNATarget
XM_017756864.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:2449   GUGCUCUCUCUCUUCUGUC   2467 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108457744), transcript variant X2, mRNA	squamosa promoter-binding-like protein 2(LOC108457744)	coding protein	psRNATarget
XM_017760104.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:2222   GUGCUCUCUCUCUUCUGUC   2240 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108460571), transcript variant X2, mRNA	squamosa promoter-binding-like protein 2(LOC108460571)	coding protein	psRNATarget
XM_017756863.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:2506   GUGCUCUCUCUCUUCUGUC   2524 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108457744), transcript variant X1, mRNA	squamosa promoter-binding-like protein 2(LOC108457744)	coding protein	psRNATarget
XM_017756865.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:2608   GUGCUCUCUCUCUUCUGUC   2626 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108457744), transcript variant X3, mRNA	squamosa promoter-binding-like protein 2(LOC108457744)	coding protein	psRNATarget
XM_017756868.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:2618   GUGCUCUCUCUCUUCUGUC   2636 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108457744), transcript variant X6, mRNA	squamosa promoter-binding-like protein 2(LOC108457744)	coding protein	psRNATarget
XM_017778560.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   |||||||||*||||||||| targets:2804   GUGCUCUCUCUCUUCUGUC   2822 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108476362), transcript variant X2, mRNA	squamosa promoter-binding-like protein 2(LOC108476362)	coding protein	psRNATarget
XM_017793014.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   *||||||||*||||||||| targets:675   AUGCUCUCUCUCUUCUGUC   693 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 3 (LOC108488727), mRNA	squamosa promoter-binding-like protein 3(LOC108488727)	coding protein	psRNATarget
XM_017792853.1	ncRNA:19   CACGAGAGAUAGAAGACAG   1   *||||||||*||||||||| targets:822   AUGCUCUCUCUCUUCUGUC   840 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 13A (LOC108488561), mRNA	squamosa promoter-binding-like protein 13A(LOC108488561)	coding protein	psRNATarget