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BaseInfo

ncRNA ID	novel_gar_miR1718
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr11:27249982-27250161 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180721
Length	24
Mature sequence(if miRNA)	157 - AGGUAACGGAGUUUAACAGUAGAG - 180
Stem-loop(if miRNA)	--    C   C             C      A              A U        UAAA    -UUU    AAAAAACCUAUUUUCAUC   CUAC GUU AACUUUGUUACCU CCUAAC GGCAGUCUUACGUG C GUCCAAAU    UUUA    AAUA                  U   |||| ||| ||||||||||||| |||||| |||||||||||||| | ||||||||    ||||    ||||   GAUG CAA UUGAGGCAAUGGA GGAUUG CUGUCAGAAUGCAC G CAGGUUUA    AAAU    AGUU                  C GA    A   U             U      -              C U        UUCA    UUAC    GAACCUACAGGUUAAUGA
Stem-loop sequence	CUACCGUUCAACUUUGUUACCUCCCUAACAGGCAGUCUUACGUGACUGUCCAAAUUAAAUUUAUUUAAUAAAAAAACCUAUUUUCAUCUCAGUAAUUGGACAUCCAAGUUGACAUUUAAAACUUAUUUGGACUGCCACGUAAGACUGUCGUUAGGUAGGUAACGGAGUUUAACAGUAGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017753110.1	ncRNA:24   GAGAUGACAAUUUGAGGCAAUGGA   1   |*|||||||||||||||||||||| targets:1593   CACUACUGUUAAACUCCGUUACCU   1616 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X7, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753109.1	ncRNA:24   GAGAUGACAAUUUGAGGCAAUGGA   1   |*|||||||||||||||||||||| targets:1596   CACUACUGUUAAACUCCGUUACCU   1619 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X6, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753105.1	ncRNA:24   GAGAUGACAAUUUGAGGCAAUGGA   1   |*|||||||||||||||||||||| targets:1626   CACUACUGUUAAACUCCGUUACCU   1649 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X3, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753107.1	ncRNA:24   GAGAUGACAAUUUGAGGCAAUGGA   1   |*|||||||||||||||||||||| targets:1683   CACUACUGUUAAACUCCGUUACCU   1706 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X4, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753108.1	ncRNA:24   GAGAUGACAAUUUGAGGCAAUGGA   1   |*|||||||||||||||||||||| targets:1701   CACUACUGUUAAACUCCGUUACCU   1724 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X5, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753103.1	ncRNA:24   GAGAUGACAAUUUGAGGCAAUGGA   1   |*|||||||||||||||||||||| targets:1731   CACUACUGUUAAACUCCGUUACCU   1754 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X1, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753104.1	ncRNA:24   GAGAUGACAAUUUGAGGCAAUGGA   1   |*|||||||||||||||||||||| targets:1786   CACUACUGUUAAACUCCGUUACCU   1809 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X2, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget