ncRNA ID | novel_gar_miR1709 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr5:18246266-18246427 [-] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR3180720 |
Length | 22 |
Mature sequence(if miRNA) | 1 - CUGCUGUCUAGUAGUUGUCGAC - 22 |
Stem-loop(if miRNA) |
UGCA     ----U        A    -------    -AC   AUGU    C       CUCU  UAU    - UUUG      AUU     UUGGC     UUAGAUAG AGGG       AGAU   GGC    GCAU AAAUAAA    GG   AACU C    UACGUC   G     |||||     |||||||| ||||       ||||   |||    |||| |||||||    ||   |||| |    ||||||   G     AGCUG     GAUCUGUC UCCC       UCUG   UCG    UGUG UUUGUUU    CC   UUGA G    AUGCGG   A ---C     UUGAU        G    GGGUGGG    GUU   -GGU    U       UAUC  UCU    A UUAA      GUA |
Stem-loop sequence | UGCAUUGGCUUUAGAUAGAAGGGAGAUACGGCAUGUGCAUCAAAUAAACUCUGGUAUAACUCUUUGUACGUCAUUGGAAUGGGCGUAAAUUGAAGUUUCUCCCUAUUUUGUUUUGUGUUGGGCUUUGGUCUGGGUGGGCCCUGCUGUCUAGUAGUUGUCGAC |