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BaseInfo

ncRNA ID novel_gar_miR1709
Species Gossypium arboreum
Class miRNA
Genome position Chr5:18246266-18246427 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180720
Length 22
Mature sequence(if miRNA) 1 - CUGCUGUCUAGUAGUUGUCGAC - 22
Stem-loop(if miRNA) UGCA     ----U        A    -------    -AC   AUGU    C       CUCU  UAU    - UUUG      AUU
    UUGGC     UUAGAUAG AGGG       AGAU   GGC    GCAU AAAUAAA    GG   AACU C    UACGUC   G
    |||||     |||||||| ||||       ||||   |||    |||| |||||||    ||   |||| |    ||||||   G
    AGCUG     GAUCUGUC UCCC       UCUG   UCG    UGUG UUUGUUU    CC   UUGA G    AUGCGG   A
---C     UUGAU        G    GGGUGGG    GUU   -GGU    U       UAUC  UCU    A UUAA      GUA
Stem-loop sequence UGCAUUGGCUUUAGAUAGAAGGGAGAUACGGCAUGUGCAUCAAAUAAACUCUGGUAUAACUCUUUGUACGUCAUUGGAAUGGGCGUAAAUUGAAGUUUCUCCCUAUUUUGUUUUGUGUUGGGCUUUGGUCUGGGUGGGCCCUGCUGUCUAGUAGUUGUCGAC