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BaseInfo

ncRNA ID	novel_gar_miR1698
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr4:79565092-79565301 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180720
Length	24
Mature sequence(if miRNA)	1 - AUUUGCUCUUUGAUCUAAUAUACA - 24
Stem-loop(if miRNA)	--                           -A           AA      C  C U     C          UAAU    --  U   C  C  G  U   -      A   UAUAUUAGAUUAAAGAGCAAAUUAGUU  UUUUGUUAAAA  UUUAUC AU U UAUUG UAAAAAUUGG    UGUA  UG CAG AU AC UA ACA UGGCAC C   |||||||||||||||||||||||||||  |||||||||||  |||||| || | ||||| ||||||||||    ||||  || ||| || || || ||| |||||| A   AUAUAAUCUAGUUUCUCGUUUAAUCAG  GAAACAAUUUU  AAAUAG UA A AUGAU AUUUUUGAUU    GCAU  AC GUC UA UG GU UGU ACUGUG G AC                           GA           AA      A  A C     A          ----    CA  U   U  U  -  C   C      C
Stem-loop sequence	UAUAUUAGAUUAAAGAGCAAAUUAGUUAUUUUGUUAAAAAAUUUAUCCAUCUUUAUUGCUAAAAAUUGGUAAUUGUAUGUCAGCAUCACGUAUACAUGGCACACAGCGUGUCACUGUCUGGUUAUUCUGUCAACUACGUUAGUUUUUAAUAGUACAAAUAGAUAAAAAUUUUAACAAAGAGGACUAAUUUGCUCUUUGAUCUAAUAUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017777449.1	ncRNA:24   ACAUAUAAUCUAGUUUCUCGUUUA   1   *|||*=|||*|||||||||||||| targets:1625   AGUACGUUAAAUCAAAGAGCAAAU   1648 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum cytochrome P450 71D10-like (LOC108475481), mRNA	cytochrome P450 71D10-like(LOC108475481)	coding protein	psRNATarget
XM_017759173.1	ncRNA:24   ACAUAUAAUCUAGUUUCUCGUUUA   1   ||||*|||||||||||||||||=* targets:2483   UGUACAUUAGAUCAAAGAGCAAGC   2506 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108459768 (LOC108459768), mRNA	uncharacterized LOC108459768(LOC108459768)	coding protein	psRNATarget
XM_017785103.1	ncRNA:24   ACAUAUAAUCUAGUUUCUCGUUUA   1   |*|||=|||||||||*|||||||| targets:916   UAUAUGUUAGAUCAAUGAGCAAAU   939 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum actin-related protein 2/3 complex subunit 5A-like (LOC108481997), mRNA	actin-related protein 2/3 complex subunit 5A-like(LOC108481997)	coding protein	psRNATarget
XM_017760336.1	ncRNA:24   ACAUAUAAUCUAGUUUCUCGUUUA   1   ||||*=||||||||||*||||||| targets:2144   UGUACGUUAGAUCAAAAAGCAAAU   2167 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X1, mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC108460726)	coding protein	psRNATarget
XM_017760338.1	ncRNA:24   ACAUAUAAUCUAGUUUCUCGUUUA   1   ||||*=||||||||||*||||||| targets:2240   UGUACGUUAGAUCAAAAAGCAAAU   2263 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X2, mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC108460726)	coding protein	psRNATarget
XM_017786219.1	ncRNA:24   ACAUAUAAUCUAGUUUCUCGUUUA   1   **|||||||*|||||||||=|||| targets:1120   AUUAUAUUAUAUCAAAGAGUAAAU   1143 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein bicaudal C homolog 1-A-like (LOC108483037), mRNA	protein bicaudal C homolog 1-A-like(LOC108483037)	coding protein	psRNATarget
XM_017784452.1	ncRNA:21   UAUAAUCUAGUUUCUCGUUUA   1   ||=||||||||||||||||*| targets:1   AUGUUAGAUCAAAGAGCAAUU   21 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum myb-related protein 305-like (LOC108481300), mRNA	myb-related protein 305-like(LOC108481300)	coding protein	psRNATarget
XM_017753157.1	ncRNA:24   ACAUAUAAUCUAGUUUCUCGUUUA   1   ||||*||||*|||||*|||||||| targets:804   UGUACAUUAUAUCAAUGAGCAAAU   827 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum peptide methionine sulfoxide reductase B5-like (LOC108454631), mRNA	peptide methionine sulfoxide reductase B5-like(LOC108454631)	coding protein	psRNATarget
XM_017762937.1	ncRNA:24   ACAU---------AUAAUCUAGUUUCUCGUUUA   1   ||||---------|||||*|||||||||=|||| targets:1320   UGUACCAUUUGAUUAUUACAUCAAAGAGUAAAU   1352 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108463007 (LOC108463007), mRNA	uncharacterized LOC108463007(LOC108463007)	coding protein	psRNATarget