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BaseInfo

ncRNA ID novel_gar_miR1694
Species Gossypium arboreum
Class miRNA
Genome position Chr4:80494171-80494291 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180720
Length 21
Mature sequence(if miRNA) 101 - UACGAGAUUUGGUUCUGAACU - 121
Stem-loop(if miRNA) --    AG AG     -A   AGAUU   AAA    AUU      --   GCCGAAAAACAGAU
  UUCA  A  AAGUU  GUG     GAC   CAUG   GACGCA  UGG              A
  ||||  |  |||||  |||     |||   ||||   ||||||  |||              A
  AAGU  U  UUUAG  CAU     CUG   GUAC   CUGCGU  ACC              A
UC    CU GG     AG   GCCUU   ---    --C      UU   AAAGUAAGAAGAAG
Stem-loop sequence UUCAAGAAGAAGUUAGUGAGAUUGACAAACAUGAUUGACGCAUGGGCCGAAAAACAGAUAAAGAAGAAGAAUGAAACCAUUUGCGUCCCAUGGUCUUCCGUACGAGAUUUGGUUCUGAACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017754157.1
ncRNA:21   UCAAGUCUUGGUUUAGAGCAU   1
  =||||||||||||*|||||||
targets:44   GGUUCAGAACCAAUUCUCGUA   64

1.5 PREDICTED: Gossypium arboreum protein DMR6-LIKE OXYGENASE 1 (LOC108455617), mRNA protein DMR6-LIKE OXYGENASE 1(LOC108455617) coding protein psRNATarget