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BaseInfo

ncRNA ID novel_gar_miR1689
Species Gossypium arboreum
Class miRNA
Genome position Chr3:90004604-90004652 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180720
Length 24
Mature sequence(if miRNA) 26 - AAUACUCUGUAACCCUGUUUCGGC - 49
Stem-loop(if miRNA) --        G      -   UU  G
  AAUACUCU UAACCC UGU  CG C
  |||||||| |||||| |||  ||
  UUGUGGGG AUUGGG ACA  GU G
CA        -      U   -U  A
Stem-loop sequence AAUACUCUGUAACCCUGUUUCGGCGAUGUACAUGGGUUAGGGGUGUUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017761879.1
ncRNA:24   CGGCUUUGUCCCAAUGUCUCAUAA   1
  *|=*=||=||||||||||||||||
targets:1835   ACUAGAAUAGGGUUACAGAGUAUU   1858

1.0 PREDICTED: Gossypium arboreum cytochrome P450 CYP749A22-like (LOC108461902), mRNA cytochrome P450 CYP749A22-like(LOC108461902) coding protein psRNATarget