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BaseInfo

ncRNA ID	novel_gar_miR1663
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr10:19181525-19181739 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180720
Length	24
Mature sequence(if miRNA)	192 - AAAGUUGGGUGACUAAAAUGAGUG - 215
Stem-loop(if miRNA)	--  A            A          C   GG      A    C      UAU         AAUUA      A         UA   UU      UU       AAUAAA   CU AUUUUAGUCACC AACUUUAAUG GUU  CAUUUU GUCA UCAUUU   CUUUUUAAA     AUUUUA UUUUAUUUU  AUU  UUCCUU  UAGAAUU      A   || |||||||||||| |||||||||| |||  |||||| |||| ||||||   |||||||||     |||||| |||||||||  |||  ||||||  |||||||   GA UAAAAUCAGUGG UUGAAAUUAU CAA  GUAAAA CAGU AGUAAA   GAAAAAUUU     UAAAAU AAAAUAAAA  UAA  AAGGAA  AUUUUGG      G GU  G            G          U   AA      C    U      --U         -----      -         --   UU      -U       AUCCAU
Stem-loop sequence	CUAAUUUUAGUCACCAAACUUUAAUGCGUUGGCAUUUUAGUCACUCAUUUUAUCUUUUUAAAAAUUAAUUUUAAUUUUAUUUUUAAUUUUUUCCUUUUUAGAAUUAAUAAAAGUACCUAGGUUUUAUAAGGAAUUAAUAAAAUAAAAUAAAAUUUUAAAAAGUAAAUGAUUGACCAAAAUGAAAACUUAUUAAAGUUGGGUGACUAAAAUGAGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017759479.1	ncRNA:24   GUGA--GUAAAAUCAGUGGGUUGAAA   1   *=||--||||||=||||||||||*|| targets:581   GGCUAACAUUUUGGUCACCCAACGUU   606 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum beta-xylosidase/alpha-L-arabinofuranosidase 2-like (LOC108460110), mRNA	beta-xylosidase/alpha-L-arabinofuranosidase 2-like(LOC108460110)	coding protein	psRNATarget
XM_017778009.1	ncRNA:24   GUG---AGUAAAAUCAGUGGGUUGAAA   1   |||---|||*|||=||||||||||||* targets:127   CACCCUUCAAUUUGGUCACCCAACUUA   153 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum probable pinoresinol-lariciresinol reductase 3 (LOC108475982), mRNA	probable pinoresinol-lariciresinol reductase 3(LOC108475982)	coding protein	psRNATarget