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BaseInfo

ncRNA ID	novel_gar_miR1659
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr1:65263124-65263273 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180720
Length	21
Mature sequence(if miRNA)	1 - UUUAAUAGAAGGACCAAUUUG - 21
Stem-loop(if miRNA)	--     U     U            -G        G UCU            GGUGGAU   AGAAUAACUAAAAUU   AGUUG UCUUU CUGUUAAAAUUU  AUUCAUUU U   GUUAAAAACUGG       GAU               G   ||||| ||||| ||||||||||||  |||||||| |   ||||||||||||       |||               U   UUAAC AGGAA GAUAAUUUUAAA  UAGGUAAA A   CGAUUUUUGACC       GGA               A GU     C     -            AG        G UGU            -----AG   CAUAUAUCCGUAUCU
Stem-loop sequence	AGUUGUUCUUUUCUGUUAAAAUUUGAUUCAUUUGUUCUGUUAAAAACUGGGGUGGAUGAUAGAAUAACUAAAAUUGUAUCUAUGCCUAUAUACAGGGACCAGUUUUUAGCUGUAGAAAUGGAUGAAAAUUUUAAUAGAAGGACCAAUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017754589.1	ncRNA:21   GUUUAACCAGGAAGAUAAUUU   1   ||||*||||||||||=||||| targets:1495   CAAACUGGUCCUUCUGUUAAA   1515 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum transcription factor PIF4-like (LOC108455997), mRNA	transcription factor PIF4-like(LOC108455997)	coding protein	psRNATarget
XM_017752284.1	ncRNA:21   GUUUAACCAGGAAGAUAAUUU   1   |*=|||||||||||*|||||| targets:1617   CUGAUUGGUCCUUCAAUUAAA   1637 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum vacuolar protein sorting-associated protein 36-like (LOC108454006), mRNA	vacuolar protein sorting-associated protein 36-like(LOC108454006)	coding protein	psRNATarget
XM_017749470.1	ncRNA:21   GUU-UAACCAGGAAGAUAAUUU   1   ==|-||*||||||||||||||| targets:372   UGACAUCGGUCCUUCUAUUAAA   393 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum E3 ubiquitin-protein ligase UPL2-like (LOC108451788), transcript variant X2, mRNA	E3 ubiquitin-protein ligase UPL2-like(LOC108451788)	coding protein	psRNATarget
XM_017749469.1	ncRNA:21   GUU-UAACCAGGAAGAUAAUUU   1   ==|-||*||||||||||||||| targets:375   UGACAUCGGUCCUUCUAUUAAA   396 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum E3 ubiquitin-protein ligase UPL2-like (LOC108451788), transcript variant X1, mRNA	E3 ubiquitin-protein ligase UPL2-like(LOC108451788)	coding protein	psRNATarget