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BaseInfo

ncRNA ID	novel_gar_miR1656
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr13:34419385-34419483 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180720
Length	24
Mature sequence(if miRNA)	76 - CUUUUUUUUGUCCAAGUUAGUCCU - 99
Stem-loop(if miRNA)	--C          C          C     ---     --CAAU  A    A    UUUUUUUUGU CAAGUUAGUC UUGAA   CUUGG      UG UCCC C    |||||||||| |||||||||| |||||   |||||      || |||| A    AAAAAAAACA GUUCAAUCAG AAUUU   GGAUC      AC GGGG U CUU          A          A     AUG     UCAAGU  -    U
Stem-loop sequence	CUUUUUUUUGUCCAAGUUAGUCCUUGAACUUGGCAAUUGAUCCCACAUUGGGGCAUGAACUCUAGGGUAUUUAAAGACUAACUUGAACAAAAAAAAUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017782806.1	ncRNA:24   UCCUGAUUGAACCUGUUUUUUUUC   1   |*||*||||||||||||||||||* targets:1352   AAGAGUAACUUGGACAAAAAAAAA   1375 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum peroxisome biogenesis protein 22-like (LOC108479941), transcript variant X1, mRNA	peroxisome biogenesis protein 22-like(LOC108479941)	coding protein	psRNATarget
XM_017755701.1	ncRNA:20   GAUUGAACCUGUUUUUUUUC   1   *|||=||||||||||||||* targets:1   GUAAUUUGGACAAAAAAAAA   20 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum uncharacterized LOC108456939 (LOC108456939), mRNA	uncharacterized LOC108456939(LOC108456939)	coding protein	psRNATarget
XM_017782558.1	ncRNA:24   UCCUGAUUGAACCUGUUUUUUUUC   1   |*||=|||=||||||||||*|||| targets:246   AAGAUUAAUUUGGACAAAACAAAG   269 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum 7-deoxyloganetin glucosyltransferase-like (LOC108479778), mRNA	7-deoxyloganetin glucosyltransferase-like(LOC108479778)	coding protein	psRNATarget
XM_017750669.1	ncRNA:24   UCCUGAUUGAACCUGUUUUUUUUC   1   =*****|||||||=|||||||||| targets:140   GCAUAAAACUUGGGCAAAAAAAAG   163 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108452886 (LOC108452886), transcript variant X3, mRNA	uncharacterized LOC108452886(LOC108452886)	coding protein	psRNATarget
XM_017750667.1	ncRNA:24   UCCUGAUUGAACCUGUUUUUUUUC   1   =*****|||||||=|||||||||| targets:140   GCAUAAAACUUGGGCAAAAAAAAG   163 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108452886 (LOC108452886), transcript variant X1, mRNA	uncharacterized LOC108452886(LOC108452886)	coding protein	psRNATarget