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BaseInfo

ncRNA ID	novel_gar_miR1650
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr5:9073138-9073287 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029586;SRR959748;SRR959750
Length	21
Mature sequence(if miRNA)	130 - UCGGACCAGGCUUCAUUCCCG - 150
Stem-loop(if miRNA)	--      UU      CU              UUGAU  -UU        -AUU    U              UUUAU   GGAAUG  GUUUGG  CGAGGUCAUAUAGG     CU   UAUAUAUA    UCCA GAAAUUUUCUUGGA     U   ||||||  ||||||  ||||||||||||||     ||   ||||||||    |||| ||||||||||||||     U   CCUUAC  CGGACC  GCUCUAGUAUAUCC     GA   AUAUAUGU    AGGU CUUUGAAAGGGCCU     A GC      UU      AG              ----C  UAU        GUAU    -              UUUAA
Stem-loop sequence	GGAAUGUUGUUUGGCUCGAGGUCAUAUAGGUUGAUCUUUUAUAUAUAAUUUCCAUGAAAUUUUCUUGGAUUUAUUUAAAUUUUCCGGGAAAGUUUCUGGAUAUGUGUAUAUAUAUAGCCCUAUAUGAUCUCGGACCAGGCUUCAUUCCCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017751100.1	ncRNA:21   GCCCUUACUUCGGACCAGGCU   1   |*||||||||||||||||||= targets:1772   CUGGAAUGAAGCCUGGUCCGG   1792 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-15 (LOC108453155), mRNA	homeobox-leucine zipper protein ATHB-15(LOC108453155)	coding protein	psRNATarget
XM_017768339.1	ncRNA:21   GCCCUUACUUCGGACCAGGCU   1   |*||=|||||||||||||||= targets:773   CUGGGAUGAAGCCUGGUCCGG   793 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein REVOLUTA (LOC108467628), mRNA	homeobox-leucine zipper protein REVOLUTA(LOC108467628)	coding protein	psRNATarget
XM_017788432.1	ncRNA:21   GCCCUUACUUCGGACCAGGCU   1   |*||=|||||||||||||||= targets:875   CUGGGAUGAAGCCUGGUCCGG   895 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-8-like (LOC108484566), mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC108484566)	coding protein	psRNATarget
XM_017787622.1	ncRNA:21   GCCCUUACUUCGGACCAGGCU   1   |*||=|||||||||||||||= targets:1015   CUGGGAUGAAGCCUGGUCCGG   1035 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-8-like (LOC108484018), transcript variant X2, mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC108484018)	coding protein	psRNATarget
XM_017787255.1	ncRNA:21   GCCCUUACUUCGGACCAGGCU   1   |*||=|||||||||||||||= targets:1256   CUGGGAUGAAGCCUGGUCCGG   1276 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein REVOLUTA-like (LOC108483704), transcript variant X3, mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC108483704)	coding protein	psRNATarget
XM_017787621.1	ncRNA:21   GCCCUUACUUCGGACCAGGCU   1   |*||=|||||||||||||||= targets:1014   CUGGGAUGAAGCCUGGUCCGG   1034 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-8-like (LOC108484018), transcript variant X1, mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC108484018)	coding protein	psRNATarget
XM_017787254.1	ncRNA:21   GCCCUUACUUCGGACCAGGCU   1   |*||=|||||||||||||||= targets:1257   CUGGGAUGAAGCCUGGUCCGG   1277 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein REVOLUTA-like (LOC108483704), transcript variant X2, mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC108483704)	coding protein	psRNATarget
XM_017787253.1	ncRNA:21   GCCCUUACUUCGGACCAGGCU   1   |*||=|||||||||||||||= targets:1257   CUGGGAUGAAGCCUGGUCCGG   1277 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein REVOLUTA-like (LOC108483704), transcript variant X1, mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC108483704)	coding protein	psRNATarget
XM_017759163.1	ncRNA:21   GCCCUUACUUCGGACCAGGCU   1   |*||=|||||||||||||||= targets:962   CUGGGAUGAAGCCUGGUCCGG   982 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-8-like (LOC108459756), mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC108459756)	coding protein	psRNATarget
XM_017747512.1	ncRNA:21   GCCCUUACUUCGGACCAGGCU   1   |*||=|||||||||||||||= targets:1434   CUGGGAUGAAGCCUGGUCCGG   1454 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein REVOLUTA-like (LOC108450068), mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC108450068)	coding protein	psRNATarget
XM_017794484.1	ncRNA:21   GCCCUUACUUCGGACCAGGCU   1   =*||=|||||||||||||||= targets:1080   UUGGGAUGAAGCCUGGUCCGG   1100 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-14-like (LOC108489754), mRNA	homeobox-leucine zipper protein ATHB-14-like(LOC108489754)	coding protein	psRNATarget