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BaseInfo

ncRNA ID	novel_gar_miR1647
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr10:74177388-74177500 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180720
Length	22
Mature sequence(if miRNA)	1 - AUUUUUCCAAAGGCGUUGGGGC - 22
Stem-loop(if miRNA)	--    U G   G   U        UGAUAUCGACACAU   -GA      -GAAA       AU   UCCA G GCC UUU GAGGAAUU              CCA   CGUAAA     AGGGUCG  G   |||| | ||| ||| ||||||||              |||   ||||||     |||||||   GGGU U CGG AAA CUUUUUAG              GGU   GCAUUU     UUUCGGU  U CG    - G   -   C        -------------U   ACG      AUGAG       CC
Stem-loop sequence	UCCAUGGGCCGUUUUGAGGAAUUUGAUAUCGACACAUCCAGACGUAAAGAAAAGGGUCGAUGUCCUGGCUUUGAGUAUUUACGGCAUGGUGAUUUUUCCAAAGGCGUUGGGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017749584.1	ncRNA:22   CGGGGUUGCGGAAACCUUUUUA   1   *==|||||*||||||||||*|| targets:759   CUUCCAACACCUUUGGAAACAU   780 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum 50S ribosomal protein L9 (LOC108451883), mRNA	50S ribosomal protein L9(LOC108451883)	coding protein	psRNATarget
XM_017784362.1	ncRNA:22   CGGGGUUGCGGAAACCUUUUUA   1   *|==|*|=|||||||||||||| targets:9673   UCUUCUAUGCCUUUGGAAAAAU   9694 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum titin-like (LOC108481178), transcript variant X5, mRNA	titin-like(LOC108481178)	coding protein	psRNATarget
XM_017784356.1	ncRNA:22   CGGGGUUGCGGAAACCUUUUUA   1   *|==|*|=|||||||||||||| targets:9586   UCUUCUAUGCCUUUGGAAAAAU   9607 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum titin-like (LOC108481178), transcript variant X4, mRNA	titin-like(LOC108481178)	coding protein	psRNATarget
XM_017784352.1	ncRNA:22   CGGGGUUGCGGAAACCUUUUUA   1   *|==|*|=|||||||||||||| targets:9673   UCUUCUAUGCCUUUGGAAAAAU   9694 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum titin-like (LOC108481178), transcript variant X3, mRNA	titin-like(LOC108481178)	coding protein	psRNATarget
XM_017784347.1	ncRNA:22   CGGGGUUGCGGAAACCUUUUUA   1   *|==|*|=|||||||||||||| targets:9673   UCUUCUAUGCCUUUGGAAAAAU   9694 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum titin-like (LOC108481178), transcript variant X2, mRNA	titin-like(LOC108481178)	coding protein	psRNATarget
XM_017784341.1	ncRNA:22   CGGGGUUGCGGAAACCUUUUUA   1   *|==|*|=|||||||||||||| targets:9673   UCUUCUAUGCCUUUGGAAAAAU   9694 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum titin-like (LOC108481178), transcript variant X1, mRNA	titin-like(LOC108481178)	coding protein	psRNATarget