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BaseInfo

ncRNA ID ath-miRf11105-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 23
Mature sequence(if miRNA) NA - UGAAGUCACUCGACCUCGGGGUC - NA
Stem-loop(if miRNA) ------   G   GGA G                     A    AUGU  U AAG   U   G  CU ----         U
      GGU AUG   U AAGUCACUCGACCUCGGGGUC AGUG    GG G   UAG GAU UC  C    UACUCGACC G
      ||| |||   | ||||||||||||||||||||| ||||    || |   ||| ||| ||  |    |||||||||
      CCA UAC   A UUUAGUGAGCUGGGGCUCCAG UCAU    CC C   GUU CUA AG  G    GUGAGCUGG G
CCUGGA   G   --- G                     C    ----  U GAA   -   G  UU UCUA         G
Stem-loop sequence GGUGAUGGGAUGAAGUCACUCGACCUCGGGGUCAAGUGAUGUGGUGAAGUAGUGAUGUCCUCUACUCGACCUGGGGGUCGAGUGAUCUGUUGAGAUCUUGAAGCUCCUACUCGACCUCGGGGUCGAGUGAUUUGACAUGACCAGGUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EF183042.1
ncRNA:23   CUGGGGCUCCAGCUCACUGAAGU   1
  |||||||||||||||||*|||||
targets:1623   GACCCCGAGGUCGAGUGUCUUCA   1645

1.5 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget
NM_103391.1
ncRNA:23   CUGGGGCUCCAGCUCACUGAAGU   1
  |||||||*|||||||||*|||||
targets:1215   GACCCCGUGGUCGAGUGUCUUCA   1237

2.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget