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BaseInfo

ncRNA ID ath-miR5646
Species Arabidopsis thaliana
Class miRNA
Genome position chr2:3517383-3517452 [-]
Reference genome TAIR10
Source miRBase
Length 20
Mature sequence(if miRNA) 1 - GUUCGAGGCACGUUGGGAGG - 20
Stem-loop(if miRNA) CA  A      A   A   GC  A  ACUAA     C
  UC CCAACG GCU UUG  CC AU     AUCUC G
  || |||||| ||| |||  || ||     |||||
  AG GGUUGC CGG AGC  GG UA     UGGAG U
GG  -      A   -   UU  A  ----G     G
Stem-loop sequence CAUCACCAACGAGCUAUUGGCCCAAUACUAAAUCUCCGUGGAGGUGAUAGGUUCGAGGCACGUUGGGAGG

Reference

1 PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis";
Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN;
Genome Res. 22:163-176(2012).