Search result

BaseInfo

ncRNA ID	novel_gar_miR1637
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr13:131228134-131228369 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180720
Length	24
Mature sequence(if miRNA)	213 - AUUUGGUGCUGGCUUGUCAAUGGC - 236
Stem-loop(if miRNA)	--A      G                         G   AAAAAA   GACCAAAUUUUUUAAAAAAAAUUUUUUUGCUGUCCAAAAAUACGAGUUUUAAAAAAAAAAAUUUGGUGAUG    UUUGGU CUGGCUUGUCAAUGGCCGGCACCAA UAC      AAA                                                                       G    |||||| ||||||||||||||||||||||||| |||      |||                                                                       C    AAACCA GACCGGAUAGUUACCGGUCGUGGUU AUG      AAA                                                                       C AAA      A                         -   --CUCA   UUUUUUUUUAAACUACAGGUUUUUAUAAUCAAAAAUUUUUUUUUUAAACAUGAACCACGGCCGGUAACUGU
Stem-loop sequence	AUUUGGUGCUGGCUUGUCAAUGGCCGGCACCAAGUACAAAAAAAAAGACCAAAUUUUUUAAAAAAAAUUUUUUUGCUGUCCAAAAAUACGAGUUUUAAAAAAAAAAAUUUGGUGAUGGCCUGUCAAUGGCCGGCACCAAGUACAAAUUUUUUUUUUAAAAACUAAUAUUUUUGGACAUCAAAUUUUUUUUUAAAACUCGUAUUGGUGCUGGCCAUUGAUAGGCCAGAACCAAAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017763681.1	ncRNA:24   CGGUAACUGUUCGGUCGUGGUUUA   1   **||*||=|*=||||||||||||| targets:2379   UGCAAUGGCUGGCCAGCACCAAAU   2402 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum NHL repeat-containing protein 2 (LOC108463775), transcript variant X2, mRNA	NHL repeat-containing protein 2(LOC108463775)	coding protein	psRNATarget
XM_017763680.1	ncRNA:24   CGGUAACUGUUCGGUCGUGGUUUA   1   **||*||=|*=||||||||||||| targets:2484   UGCAAUGGCUGGCCAGCACCAAAU   2507 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum NHL repeat-containing protein 2 (LOC108463775), transcript variant X1, mRNA	NHL repeat-containing protein 2(LOC108463775)	coding protein	psRNATarget