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BaseInfo

ncRNA ID novel_gar_miR1631
Species Gossypium arboreum
Class miRNA
Genome position Chr13:116710293-116710364 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180720
Length 22
Mature sequence(if miRNA) 51 - UUGACGUGGACAAAACGCUCCC - 72
Stem-loop(if miRNA) --    AU     -    A      -    -GUG   A
  GAGC  UUUUG CCAC UCAGCA AAGU    UCC C
  ||||  ||||| |||| |||||| ||||    |||
  CUCG  AAAAC GGUG AGUUGU UUUA    AGG G
CC    -C     A    C      G    GUGA   A
Stem-loop sequence GAGCAUUUUUGCCACAUCAGCAAAGUGUGUCCACGAGGAAGUGAUUUGUGUUGACGUGGACAAAACGCUCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017784438.1
ncRNA:22   CCCUCGCAAAACAGGUGCAGUU   1
  ||||||||||||||||=||||=
targets:5   GGGAGCGUUUUGUCCAUGUCAG   26

2.5 PREDICTED: Gossypium arboreum serine/threonine-protein phosphatase 7 long form homolog (LOC108481281), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC108481281) coding protein psRNATarget