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BaseInfo

ncRNA ID	novel_gar_miR1628
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr13:88337055-88337103 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180720
Length	24
Mature sequence(if miRNA)	1 - AAUGCUCUGUAACCCUGUUUCGAC - 24
Stem-loop(if miRNA)	--        G       GU    A   AAUGCUCU UAACCCU  UUCG C   |||||||| |||||||  ||||   UUGUGGGG AUUGGGG  AAGU G CA        -       AU    U
Stem-loop sequence	AAUGCUCUGUAACCCUGUUUCGACGUUGAAUAGGGGUUAGGGGUGUUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017750397.1	ncRNA:24   CAGC---UUUGUCCCAAUGUCUCGUAA   1   ||||---=||=||||||||=||||||| targets:682   GUCGCUGGAAUAGGGUUACGGAGCAUU   708 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108452575 (LOC108452575), transcript variant X4, mRNA	uncharacterized LOC108452575(LOC108452575)	coding protein	psRNATarget
XM_017750381.1	ncRNA:24   CAGC---UUUGUCCCAAUGUCUCGUAA   1   ||||---=||=||||||||=||||||| targets:864   GUCGCUGGAAUAGGGUUACGGAGCAUU   890 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108452575 (LOC108452575), transcript variant X2, mRNA	uncharacterized LOC108452575(LOC108452575)	coding protein	psRNATarget
XM_017750389.1	ncRNA:24   CAGC---UUUGUCCCAAUGUCUCGUAA   1   ||||---=||=||||||||=||||||| targets:866   GUCGCUGGAAUAGGGUUACGGAGCAUU   892 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108452575 (LOC108452575), transcript variant X3, mRNA	uncharacterized LOC108452575(LOC108452575)	coding protein	psRNATarget
XM_017750373.1	ncRNA:24   CAGC---UUUGUCCCAAUGUCUCGUAA   1   ||||---=||=||||||||=||||||| targets:880   GUCGCUGGAAUAGGGUUACGGAGCAUU   906 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108452575 (LOC108452575), transcript variant X1, mRNA	uncharacterized LOC108452575(LOC108452575)	coding protein	psRNATarget
XM_017761879.1	ncRNA:24   CAGCUUUGUCCCAAUGUCUCGUAA   1   **=*=||=||||||||||||=||| targets:1835   ACUAGAAUAGGGUUACAGAGUAUU   1858 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum cytochrome P450 CYP749A22-like (LOC108461902), mRNA	cytochrome P450 CYP749A22-like(LOC108461902)	coding protein	psRNATarget