Search result

BaseInfo

ncRNA ID	novel_gar_miR1626
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr12:5422838-5422903 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180720
Length	21
Mature sequence(if miRNA)	1 - UUGUACUAGGAGUUGGAUUGU - 21
Stem-loop(if miRNA)	--U     UA    -    A    AUU   C    A    UGUAC  GGAG UUGG UUGU   UUA UUUU C    |||||  |||| |||| ||||   ||| ||||    ACAUG  UCUC GAUU AACG   AGU AAAA U AUU     --    U    A    ---   A    A
Stem-loop sequence	UUGUACUAGGAGUUGGAUUGUAUUUUACUUUUACUAAAAAAUGAGCAAAUUAGUCUCUGUACAUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017786166.1	ncRNA:21   UGUUAGGUUGAGGAUCAUGUU   1   ||||||||||||||||||=|| targets:3972   ACAAUCCAACUCCUAGUAUAA   3992 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum phytosulfokine receptor 1-like (LOC108483004), transcript variant X2, mRNA	phytosulfokine receptor 1-like(LOC108483004)	coding protein	psRNATarget
XM_017786165.1	ncRNA:21   UGUUAGGUUGAGGAUCAUGUU   1   ||||||||||||||||||=|| targets:4491   ACAAUCCAACUCCUAGUAUAA   4511 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum phytosulfokine receptor 1-like (LOC108483004), transcript variant X1, mRNA	phytosulfokine receptor 1-like(LOC108483004)	coding protein	psRNATarget
XM_017753666.1	ncRNA:21   UGUUAGGUUGAGGAUCAUGUU   1   ||||||=|||||=|||||||| targets:2159   ACAAUCUAACUCUUAGUACAA   2179 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum beta-1,3-galactosyltransferase GALT1-like (LOC108455052), mRNA	beta-1,3-galactosyltransferase GALT1-like(LOC108455052)	coding protein	psRNATarget
XM_017783846.1	ncRNA:21   UGUUAGGUUGAGGAUCAUGUU   1   =||||||=|||=||||||||| targets:120   GCAAUCCGACUUCUAGUACAA   140 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum exosome complex component RRP43-like (LOC108480752), transcript variant X2, mRNA	exosome complex component RRP43-like(LOC108480752)	coding protein	psRNATarget
XM_017757240.1	ncRNA:21   UGUUAGGUUGAGGAUCAUGUU   1   |||||||*|||||||*||||| targets:356   ACAAUCCUACUCCUAAUACAA   376 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum auxin-binding protein ABP19a-like (LOC108458010), mRNA	auxin-binding protein ABP19a-like(LOC108458010)	coding protein	psRNATarget
XM_017788261.1	ncRNA:21   UGUUAGGUUGAGGAUCAUGUU   1   =|||||==||||||||||||= targets:505   GCAAUCUGACUCCUAGUACAG   525 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum probable polygalacturonase At1g80170 (LOC108484468), transcript variant X2, mRNA	probable polygalacturonase At1g80170(LOC108484468)	coding protein	psRNATarget
XM_017751149.1	ncRNA:21   UGUUAGGUUGAGGAUCAUGUU   1   ==|||=|=||||||||||||= targets:764   GUAAUUCGACUCCUAGUACAG   784 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum protein-L-isoaspartate O-methyltransferase 1 (LOC108453182), transcript variant X2, mRNA	protein-L-isoaspartate O-methyltransferase 1(LOC108453182)	coding protein	psRNATarget