Search result

BaseInfo

ncRNA ID	novel_gar_miR1622
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr12:33182774-33182822 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180720
Length	24
Mature sequence(if miRNA)	1 - AAUGCUCUGUAACCCUGUUUUAGC - 24
Stem-loop(if miRNA)	--        G      -     UA   AAUGCUCU UAACCC UGUUU  G   |||||||| |||||| |||||  C   UUGUGGGA AUUGGG AUAGG  G CA        -      U     CA
Stem-loop sequence	AAUGCUCUGUAACCCUGUUUUAGCGACGGAUAUGGGUUAAGGGUGUUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017750397.1	ncRNA:24   CGAUUUUGUCCCAAUGUCUCGUAA   1   |||==||=||||||||=||||||| targets:685   GCUGGAAUAGGGUUACGGAGCAUU   708 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108452575 (LOC108452575), transcript variant X4, mRNA	uncharacterized LOC108452575(LOC108452575)	coding protein	psRNATarget
XM_017750381.1	ncRNA:24   CGAUUUUGUCCCAAUGUCUCGUAA   1   |||==||=||||||||=||||||| targets:867   GCUGGAAUAGGGUUACGGAGCAUU   890 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108452575 (LOC108452575), transcript variant X2, mRNA	uncharacterized LOC108452575(LOC108452575)	coding protein	psRNATarget
XM_017750389.1	ncRNA:24   CGAUUUUGUCCCAAUGUCUCGUAA   1   |||==||=||||||||=||||||| targets:869   GCUGGAAUAGGGUUACGGAGCAUU   892 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108452575 (LOC108452575), transcript variant X3, mRNA	uncharacterized LOC108452575(LOC108452575)	coding protein	psRNATarget
XM_017750373.1	ncRNA:24   CGAUUUUGUCCCAAUGUCUCGUAA   1   |||==||=||||||||=||||||| targets:883   GCUGGAAUAGGGUUACGGAGCAUU   906 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108452575 (LOC108452575), transcript variant X1, mRNA	uncharacterized LOC108452575(LOC108452575)	coding protein	psRNATarget
XM_017761879.1	ncRNA:24   CGAUUUUGUCCCAAUGUCUCGUAA   1   *|||=||=||||||||||||=||| targets:1835   ACUAGAAUAGGGUUACAGAGUAUU   1858 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum cytochrome P450 CYP749A22-like (LOC108461902), mRNA	cytochrome P450 CYP749A22-like(LOC108461902)	coding protein	psRNATarget
XM_017791224.1	ncRNA:24   CGAUUUUGUCCCAAUGUCUCGUAA   1   |=|||=**|||||||||||||||| targets:33   GUUAAGUAAGGGUUACAGAGCAUU   56 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum 60S ribosomal protein L9-1-like (LOC108487023), mRNA	60S ribosomal protein L9-1-like(LOC108487023)	coding protein	psRNATarget