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BaseInfo

ncRNA ID	novel_gar_miR1619
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr12:24659532-24659726 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180720
Length	23
Mature sequence(if miRNA)	173 - UUUACUCUUUGAUCUAACAUACA - 195
Stem-loop(if miRNA)	--UACA          A  C     AAUCCUUUCUAC                    UUAAUUA       ACAUGACUAA  CAAUACCAAGAGAAAUACAUG       UUAGAUCAAA AG AAACU            UAAAAAUUUUAUUUAUUUCU       AAAAUUG          UG                     U       |||||||||| || |||||            ||||||||||||||||||||       |||||||          ||       AAUCUAGUUU UC UUUGA            AUUUUUAAGAUAGAUAAAGA       UUUUGAC          GG                     G ACAUAC          C  A     ----CCAUAACA                    -UGACUA       --------CA  AACUUGCCGUUUUACCCUCAC
Stem-loop sequence	UACAUUAGAUCAAAAAGCAAACUAAUCCUUUCUACUAAAAAUUUUAUUUAUUUCUUUAAUUAAAAAUUGACAUGACUAAUGCAAUACCAAGAGAAAUACAUGUGCACUCCCAUUUUGCCGUUCAAGGACCAGUUUUAUCAGUAGAAAUAGAUAGAAUUUUUAACAAUACCAGUUUACUCUUUGAUCUAACAUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017760419.1	ncRNA:23   ACAUACAAUCUAGUUUCUCAUUU   1   ***|*|||||||||||||||||| targets:3457   AAAACGUUAGAUCAAAGAGUAAA   3479 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum pentatricopeptide repeat-containing protein At2g17140 (LOC108460778), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At2g17140(LOC108460778)	coding protein	psRNATarget
XM_017760420.1	ncRNA:23   ACAUACAAUCUAGUUUCUCAUUU   1   ***|*|||||||||||||||||| targets:3458   AAAACGUUAGAUCAAAGAGUAAA   3480 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum pentatricopeptide repeat-containing protein At2g17140 (LOC108460778), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At2g17140(LOC108460778)	coding protein	psRNATarget
XM_017760422.1	ncRNA:23   ACAUACAAUCUAGUUUCUCAUUU   1   ***|*|||||||||||||||||| targets:3462   AAAACGUUAGAUCAAAGAGUAAA   3484 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum pentatricopeptide repeat-containing protein At2g17140 (LOC108460778), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At2g17140(LOC108460778)	coding protein	psRNATarget
XM_017786219.1	ncRNA:23   ACAUACAAUCUAGUUUCUCAUUU   1   **|||*|||*||||||||||||| targets:1120   AUUAUAUUAUAUCAAAGAGUAAA   1142 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum protein bicaudal C homolog 1-A-like (LOC108483037), mRNA	protein bicaudal C homolog 1-A-like(LOC108483037)	coding protein	psRNATarget
XM_017785112.1	ncRNA:23   ACAUACAAUCUAGUUUCUCAUUU   1   |**|**||||||||||||||||| targets:1175   UACAAAUUAGAUCAAAGAGUAAA   1197 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum coenzyme Q-binding protein COQ10 homolog, mitochondrial-like (LOC108482007), mRNA	coenzyme Q-binding protein COQ10 homolog, mitochondrial-like(LOC108482007)	coding protein	psRNATarget
XM_017752094.1	ncRNA:23   ACAUA--CAAUCUAGUUUCUCAUUU   1   **|||--|||||||||||||||||| targets:1108   CCUAUACGUUAGAUCAAAGAGUAAA   1132 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum universal stress protein PHOS32-like (LOC108453792), transcript variant X3, mRNA	universal stress protein PHOS32-like(LOC108453792)	coding protein	psRNATarget
XM_017754642.1	ncRNA:23   ACAUACAAUCUAGUUUCUCAUUU   1   |**||||||*||=|||||||||| targets:787   UCAAUGUUAAAUUAAAGAGUAAA   809 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108456052 (LOC108456052), transcript variant X1, mRNA	uncharacterized LOC108456052(LOC108456052)	coding protein	psRNATarget
XM_017784452.1	ncRNA:20   UACAAUCUAGUUUCUCAUUU   1   ||||||||||||||||*||* targets:1   AUGUUAGAUCAAAGAGCAAU   20 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum myb-related protein 305-like (LOC108481300), mRNA	myb-related protein 305-like(LOC108481300)	coding protein	psRNATarget