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BaseInfo

ncRNA ID novel_gar_miR1618
Species Gossypium arboreum
Class miRNA
Genome position Chr12:24303360-24303488 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180720
Length 21
Mature sequence(if miRNA) 109 - GAAGGACUGGUUUGCUCUUUG - 129
Stem-loop(if miRNA) --          UG  U            -AU             ---UA   UUAAAACUGGCGUG
  AAGAGCAAAU  GU CUUUUUGUUAAA   UUUUAUCUGUUUU     CUG              G
  ||||||||||  || ||||||||||||   |||||||||||||     |||
  UUCUCGUUUG  CA GGAAGACAAUUU   AAAGUAGGUAAAA     GAU              C
GU          GU  -            AUU             CGGAA   CUUAUAAUCAGGGA
Stem-loop sequence AAGAGCAAAUUGGUUCUUUUUGUUAAAAUUUUUAUCUGUUUUUACUGUUAAAACUGGCGUGGCAGGGACUAAUAUUCUAGAAGGCAAAAUGGAUGAAAUUAUUUAACAGAAGGACUGGUUUGCUCUUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017789820.1
ncRNA:21   GUUUCUCGUUUGGUCAGGAAG   1
  =*|||=||||||||||=||||
targets:486   UCAAGGGCAAACCAGUUCUUC   506

2.5 PREDICTED: Gossypium arboreum transcription factor MYB36-like (LOC108485988), mRNA transcription factor MYB36-like(LOC108485988) coding protein psRNATarget